Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021819
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein |Sch...    48   2e-06
SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr...    28   1.6  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    26   4.8  
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    25   8.4  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    25   8.4  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   8.4  

>SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 20/38 (52%), Positives = 30/38 (78%)
 Frame = +2

Query: 509 TTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGF 622
           +TA I++SG++   G  SED +K+A+R+YAR +QKLGF
Sbjct: 102 STALIFASGKMVVLGGKSEDDSKLASRKYARIIQKLGF 139



 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 297 SQRQAITELAPTQPA-VDEEEETPEIDIMINNVVCSFSVKCHLNLRQIXLNGVNVEF 464
           +  +A  E A +  A V + E    I   + N+V + ++ C L+L+ I L+  N E+
Sbjct: 29  ANNEATNETADSGDAEVSKNEGVSGIVPTLQNIVATVNLDCRLDLKTIALHARNAEY 85


>SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 163 IQENGIKELSKGTHGVVANHGISTHSVPTHMCQTMNIARRP 285
           +QE   K++++    V+   G++     THMC  M    +P
Sbjct: 165 VQERLTKQVAQAIQAVLKPQGVAVVMEATHMCMVMRGVEKP 205


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 20/85 (23%), Positives = 38/85 (44%)
 Frame = -1

Query: 620 SRVSVRRVHNVEQQSSLDLHWWRPCTSRVLTTKSKPSLRPAQLHRYHPILTSKFYINTIQ 441
           S ++ R   ++ Q+   +L    P  SR  T   +PS   + LHR+   LTS  +     
Sbjct: 394 SSINRRPPSSINQRPPSNLRILAPSRSRA-TIHERPS--SSILHRHAHSLTSSSFSTKTL 450

Query: 440 XNLSQVQVALNTKTAHDIVYHDINF 366
               ++Q +     +  +V+HD ++
Sbjct: 451 ATTKEIQNSPTLVESSTVVHHDPSY 475


>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 644 ESCGSALQSRVSVRRVHNVEQQSSLDLHWW 555
           +SC SA ++  S + + NVEQQ +  +H+W
Sbjct: 108 QSCKSACEN--SSQSLLNVEQQYAQQVHFW 135


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +3

Query: 327 PTQPAVDEEEETPEIDIM 380
           P QP  DEEEE  E D M
Sbjct: 169 PVQPDADEEEEEEEADEM 186


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = +3

Query: 225 HIHTQCPNTYVPDHEYCETTAQTPSQRQAITELAPTQPAVDEEEETPEIDIM-INNVVCS 401
           H+    PN      E  +TT+    +   +T L+P +P+    EE     IM +   + S
Sbjct: 403 HLTNHSPNDLTNGEEEMDTTSAFNIENSHLTLLSPIRPSSRSMEE----QIMDLTQPISS 458

Query: 402 FSVKCHLN 425
            +   HLN
Sbjct: 459 TNAPTHLN 466


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,835
Number of Sequences: 5004
Number of extensions: 55447
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)