Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021819
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0891 + 24065001-24065101,24065260-24065345,24065902-240659... 58 7e-09
10_08_0114 - 14911119-14911301,14911458-14911550,14911634-149116... 58 7e-09
03_05_0548 + 25439649-25439734,25440712-25440799,25441160-254412... 58 7e-09
04_04_0328 + 24441747-24442073,24442205-24442327,24442947-244430... 31 0.71
02_01_0097 + 712586-713035,714120-715080,715577-715746 29 2.9
01_05_0799 + 25334460-25334994,25335060-25335236,25335325-253354... 29 3.8
12_01_0618 - 5099021-5099668,5099701-5100221,5100311-5100352,510... 29 5.0
02_01_0784 + 5843029-5843427,5843699-5844532 28 6.6
01_06_0561 + 30251547-30252173,30252248-30252405,30253250-302541... 28 6.6
07_03_1739 - 29148685-29149017,29149564-29149726,29149844-291500... 28 8.7
>12_02_0891 +
24065001-24065101,24065260-24065345,24065902-24065965,
24066137-24066224,24066810-24066881,24067821-24067871,
24067940-24067984,24068086-24068178,24068265-24068366,
24068442-24068515,24068540-24068579
Length = 271
Score = 58.0 bits (134), Expect = 7e-09
Identities = 25/38 (65%), Positives = 33/38 (86%)
Frame = +2
Query: 509 TTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGF 622
TTA I++SG++ CTGA SE Q+K+AAR+YAR +QKLGF
Sbjct: 127 TTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGF 164
>10_08_0114 -
14911119-14911301,14911458-14911550,14911634-14911678,
14911831-14911953,14912090-14912177,14912976-14913118
Length = 224
Score = 58.0 bits (134), Expect = 7e-09
Identities = 25/38 (65%), Positives = 33/38 (86%)
Frame = +2
Query: 509 TTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGF 622
TTA I++SG++ CTGA SED +K+AAR+YAR +QKLGF
Sbjct: 91 TTALIFASGKMVCTGAKSEDHSKLAARKYARIVQKLGF 128
>03_05_0548 +
25439649-25439734,25440712-25440799,25441160-25441204,
25441407-25441478,25442402-25442452,25442527-25442571,
25442670-25442762,25442848-25442949,25443024-25443097,
25443130-25443160
Length = 228
Score = 58.0 bits (134), Expect = 7e-09
Identities = 25/38 (65%), Positives = 33/38 (86%)
Frame = +2
Query: 509 TTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGF 622
TTA I++SG++ CTGA SE Q+K+AAR+YAR +QKLGF
Sbjct: 87 TTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGF 124
>04_04_0328 +
24441747-24442073,24442205-24442327,24442947-24443012,
24443155-24443223,24443263-24443307
Length = 209
Score = 31.5 bits (68), Expect = 0.71
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 163 IQENGIKELSKGTHGVVANHGISTHSVPTH 252
I E+GI +L+ HG +HG S +V TH
Sbjct: 30 ISEDGIPDLTDSIHGAAHHHGRSEENVSTH 59
>02_01_0097 + 712586-713035,714120-715080,715577-715746
Length = 526
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/56 (28%), Positives = 22/56 (39%)
Frame = +3
Query: 141 RGGHGDAHPREWY*RAEQGHPRGSGKPWHIHTQCPNTYVPDHEYCETTAQTPSQRQ 308
+GG GD + W R G P G+ H P E+T + +QRQ
Sbjct: 470 KGGGGDGRGKGWRKRRTGGRPAAGGRGCGAHAAAPRVGGRGGAGGESTREAMAQRQ 525
>01_05_0799 + 25334460-25334994,25335060-25335236,25335325-25335447,
25335559-25335624,25335717-25336685,25336791-25336912,
25337156-25337549,25337888-25338009,25338253-25338646,
25338983-25339104,25339348-25339830,25340291-25340960,
25341713-25342224,25342484-25342540
Length = 1581
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = +3
Query: 159 AHPRE---WY*RAEQGHPRGSGKPWHIHTQCPNTYVPDHEYCE 278
AHP E +Y R H RG H+ T C TY E CE
Sbjct: 1252 AHPAEGERYYLRVLLNHVRGPTSHEHLRTVCGITYSTCREACE 1294
>12_01_0618 -
5099021-5099668,5099701-5100221,5100311-5100352,
5100905-5100962
Length = 422
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 650 LHESCGSALQSRVSVRRVHNVEQQSSLDLHWWRPCTSRVLT 528
+HES G AL S ++ + QQ++ +H W R+ T
Sbjct: 61 VHESAGGALSSSFDWSKLAEMAQQAAEGIHTWSSEVERLKT 101
>02_01_0784 + 5843029-5843427,5843699-5844532
Length = 410
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +3
Query: 195 GHPRGSGKPWHIHTQCPNTYVPDHEYCETTAQTPSQRQAITELAPTQPAVD 347
G P GS +P I + +TY+ + C T ++R + P +P +D
Sbjct: 16 GAPLGSWRPAEIVSGNGHTYLVSYGSCPTQGSVAAERVPRKAMRPLRPPLD 66
>01_06_0561 +
30251547-30252173,30252248-30252405,30253250-30254192,
30254271-30254438,30254546-30254857,30255498-30255557,
30255905-30255937,30256083-30256271
Length = 829
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 237 QCPN-TYVPDHEYCETTAQTPSQRQAITELAPTQPAVDEEEETPEID 374
QC N ++ D E C T + S + P PAVD EE+ ++
Sbjct: 336 QCGNFSFELDKEVCSETVEDQSDCGSRKRFRPELPAVDMEEQNRSLE 382
>07_03_1739 -
29148685-29149017,29149564-29149726,29149844-29150028,
29150708-29150977
Length = 316
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 213 HYPVGALAQLFNTILLDERRHDHHGVIHISFPTLIIY 103
H V +FN IL E+ DH G PTL+++
Sbjct: 97 HRAVDGPPPVFNQILTSEQEEDHDGPPDKLIPTLLVW 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,211,382
Number of Sequences: 37544
Number of extensions: 387860
Number of successful extensions: 1109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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