Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021819
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)                   60   2e-09
SB_36671| Best HMM Match : IBB (HMM E-Value=2.8)                       33   0.24 
SB_20396| Best HMM Match : SEC-C (HMM E-Value=1.5)                     32   0.55 
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.2  
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)                        29   3.9  
SB_54756| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_25462| Best HMM Match : Peptidase_S8 (HMM E-Value=0)                28   8.9  

>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
          Length = 440

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 26/38 (68%), Positives = 34/38 (89%)
 Frame = +2

Query: 509 TTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGF 622
           TTA I+SSG++ CTGA SE+Q+K+AAR+YAR +QKLGF
Sbjct: 327 TTALIFSSGKMVCTGAKSEEQSKLAARKYARVVQKLGF 364


>SB_36671| Best HMM Match : IBB (HMM E-Value=2.8)
          Length = 1080

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 17/80 (21%), Positives = 35/80 (43%)
 Frame = +3

Query: 231 HTQCPNTYVPDHEYCETTAQTPSQRQAITELAPTQPAVDEEEETPEIDIMINNVVCSFSV 410
           H+ C ++Y  +H      A+  +Q + +     ++P +     TP ID++   +  + S 
Sbjct: 78  HSTCYSSYTSEHNLRHCHAKFEAQARDVENQISSEPTISTRSSTPPIDLLKCFICGNRSY 137

Query: 411 KCHLNLRQIXLNGVNVEFRR 470
           K    L  I  N  ++  R+
Sbjct: 138 KKDKRLLNIATNEASLSLRQ 157


>SB_20396| Best HMM Match : SEC-C (HMM E-Value=1.5)
          Length = 715

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 17/80 (21%), Positives = 34/80 (42%)
 Frame = +3

Query: 231 HTQCPNTYVPDHEYCETTAQTPSQRQAITELAPTQPAVDEEEETPEIDIMINNVVCSFSV 410
           H+ C ++Y  +H      A+  +Q + +     ++P +     TP ID+    +  + S 
Sbjct: 186 HSTCYSSYTSEHNLRHCHAKFEAQARDVENQISSEPTISTRSSTPPIDLSKCFICGNRSY 245

Query: 411 KCHLNLRQIXLNGVNVEFRR 470
           K    L  I  N  ++  R+
Sbjct: 246 KKDKRLLNIATNEASLSLRQ 265


>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1894

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 246  NTYVPDHEYCETTAQTPSQRQAITELAPTQPAVDEEE 356
            +T    H YCE T  T +     + L P  P +DE E
Sbjct: 1417 STETISHRYCEGTLDTDAALPRTSSLDPQPPKIDESE 1453


>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2681

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 58   SKNENLNSYSHQNIKIYNQCWKG 126
            +K  NL  YSH  ++ Y  CW G
Sbjct: 1364 AKMANLKGYSHFGLQDYGSCWSG 1386


>SB_54756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 240 TVCGYAMVCHY-PVGALAQLFNTILLDERRHDHHGVIHISFPTLIIYFN 97
           T+C    V    P+G +A L     +D   HD+   +H+S  TL  YFN
Sbjct: 84  TLCALVAVSWATPIGVVAFLAINSDIDPYYHDYGCFVHLSTSTLKHYFN 132


>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 808

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 264 HEYCETTAQTPSQRQAITELAPTQPAVDEEEETPE 368
           H++ ETTA+ P +R    E  P  P  DE +E  E
Sbjct: 269 HQHHETTAERPQRR----EFRPVSPKEDESQEPHE 299


>SB_25462| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
          Length = 446

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +1

Query: 70  NLNSYSHQNIKIYNQCW--KGDVNHSVVVMAT 159
           N  SY  Q I IY+ CW  K D   S+ V AT
Sbjct: 289 NALSYKPQYIDIYSNCWGPKDDGKGSIYVWAT 320


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,113,934
Number of Sequences: 59808
Number of extensions: 461782
Number of successful extensions: 1320
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1318
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)