Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021819
         (728 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    28   0.34 
AJ007394-1|CAA07489.1|  112|Anopheles gambiae mucin protein.           26   1.0  
AF046924-1|AAC08530.1|  122|Anopheles gambiae mucin protein.           26   1.0  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    25   2.4  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    24   4.2  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    24   5.5  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    23   7.3  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    23   9.7  
AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein ...    23   9.7  

>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
           channel alpha subunitprotein.
          Length = 2139

 Score = 27.9 bits (59), Expect = 0.34
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 139 SVVVMATLIQENGIKELSKGTHGVVANHGISTHSVPT 249
           +VV M  ++  N I E + G H   ++HG+S +  PT
Sbjct: 724 TVVDMKDVMVLNDIIEQAAGRHSRASDHGVSVYYFPT 760


>AJ007394-1|CAA07489.1|  112|Anopheles gambiae mucin protein.
          Length = 112

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 494 VAPAVTTASIWSSGRVTCTGATSEDQAKIAARRYARAL 607
           VAP  TT +  +SG VT TG+T       A +    AL
Sbjct: 59  VAPGQTTTTTVASGPVTTTGSTDTTTPSSAPQDVKAAL 96


>AF046924-1|AAC08530.1|  122|Anopheles gambiae mucin protein.
          Length = 122

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 494 VAPAVTTASIWSSGRVTCTGATSEDQAKIAARRYARAL 607
           VAP  TT +  +SG VT TG+T       A +    AL
Sbjct: 69  VAPGQTTTTTVASGPVTTTGSTDTTTPSSAPQDVKAAL 106


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 614 VSVRRVHNVEQQSSLDLHWWRP 549
           + ++R  NV Q    D++WW P
Sbjct: 294 IVMQRAPNVLQHQHRDVYWWAP 315


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 6/26 (23%), Positives = 15/26 (57%)
 Frame = -1

Query: 611 SVRRVHNVEQQSSLDLHWWRPCTSRV 534
           +++R+  + +    D++WW P   R+
Sbjct: 348 TMQRISGLHKSPHHDMYWWTPAIKRL 373


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 258  PDHEYCETTAQTPSQRQAITEL 323
            PD ++C  T Q  S+ QA  EL
Sbjct: 1087 PDRQFCFLTPQDMSEVQATAEL 1108


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 485 NDEVAPAVTTASIWSSGR 538
           N+ V+ +  TA+IW+SGR
Sbjct: 43  NNWVSDSTGTAAIWASGR 60


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -1

Query: 611 SVRRVHNVEQQSSLDLHWWRPCTSRV 534
           +++RV  + Q    ++ WW P  +R+
Sbjct: 328 TMQRVTRLHQDPHRNIFWWSPLLARL 353


>AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein
           protein.
          Length = 814

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -3

Query: 252 MCWDTVCGYAMVCHYPVGALAQLFNTILLD 163
           +CW+T+ G  +     +  L  + +T++LD
Sbjct: 480 LCWETMFGQELAKLTVMDLLVTIVSTLILD 509


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 738,279
Number of Sequences: 2352
Number of extensions: 14545
Number of successful extensions: 32
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74428737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)