BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV021819 (728 letters) Database: fruitfly 53,049 sequences; 24,988,368 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value DQ162845-1|ABA42953.1| 1715|Drosophila melanogaster TRF2 protein. 80 4e-15 AY069554-1|AAL39699.1| 632|Drosophila melanogaster LD27895p pro... 80 4e-15 AJ238442-1|CAB41475.1| 537|Drosophila melanogaster TBP-like fac... 80 4e-15 AF136569-1|AAD28784.1| 632|Drosophila melanogaster TATA box bin... 80 4e-15 AE014298-1172|AAF46368.2| 632|Drosophila melanogaster CG18009-P... 80 4e-15 AE014298-1171|AAF46369.3| 632|Drosophila melanogaster CG18009-P... 80 4e-15 U35147-1|AAA79092.1| 354|Drosophila melanogaster TATA-box bindi... 58 9e-09 U11718-1|AAA68629.1| 353|Drosophila melanogaster TATA-box bindi... 58 9e-09 M38388-1|AAA28926.1| 353|Drosophila melanogaster TATA-consensus... 58 9e-09 M38082-1|AAA28931.1| 353|Drosophila melanogaster TATA-box bindi... 58 9e-09 AY069663-1|AAL39808.1| 353|Drosophila melanogaster LD44083p pro... 58 9e-09 AE013599-3256|AAF46754.1| 353|Drosophila melanogaster CG9874-PA... 58 9e-09 X70838-1|CAA50186.1| 224|Drosophila melanogaster TBP-related fa... 47 2e-05 X70837-1|CAA50185.1| 224|Drosophila melanogaster TBP-related fa... 47 2e-05 AY128483-1|AAM75076.1| 224|Drosophila melanogaster RE61442p pro... 47 2e-05 AE014134-1392|AAF52600.1| 224|Drosophila melanogaster CG7562-PA... 47 2e-05 AE014134-2459|AAF53372.1| 377|Drosophila melanogaster CG16876-P... 31 1.2 BT021949-1|AAX51654.1| 819|Drosophila melanogaster LD12033p pro... 31 2.1 AE014296-2720|AAF49474.1| 819|Drosophila melanogaster CG16807-P... 31 2.1 AY069725-1|AAL39870.1| 321|Drosophila melanogaster LP03067p pro... 29 6.5 AE014296-2375|AAF49748.1| 321|Drosophila melanogaster CG7924-PA... 29 6.5 >DQ162845-1|ABA42953.1| 1715|Drosophila melanogaster TRF2 protein. Length = 1715 Score = 79.8 bits (188), Expect = 4e-15 Identities = 55/137 (40%), Positives = 73/137 (53%), Gaps = 7/137 (5%) Frame = +3 Query: 333 QPAVDEEEETPEIDIMINNVVCSFSVKCHLNLRQIXLNGVNVEFRRENGMVTMKXXXXXX 512 QP D E E +DI+INNVVCSFSV CHL LR+I L G NVE+RRENGMVTMK Sbjct: 1274 QPIADNEHE---LDIVINNVVCSFSVGCHLKLREIALQGSNVEYRRENGMVTMKLRHPYT 1330 Query: 513 XXXF---GRQDA*RARAPPV-KIKRR---LLLDVMHAPYRNSALKCASATFV*SMY*ETC 671 GR A + + K+ R L + P R + + TC Sbjct: 1331 TASIWSSGRITCTGATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVL-------GTC 1383 Query: 672 RMPFGIRIISFSKKYKE 722 MP+ I+I++FS++++E Sbjct: 1384 SMPWAIKIVNFSERHRE 1400 Score = 71.3 bits (167), Expect = 1e-12 Identities = 32/38 (84%), Positives = 34/38 (89%) Frame = +2 Query: 509 TTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGF 622 TTASIWSSGR+TCTGATSE AK+AARRYAR L KLGF Sbjct: 1330 TTASIWSSGRITCTGATSESMAKVAARRYARCLGKLGF 1367 >AY069554-1|AAL39699.1| 632|Drosophila melanogaster LD27895p protein. Length = 632 Score = 79.8 bits (188), Expect = 4e-15 Identities = 55/137 (40%), Positives = 73/137 (53%), Gaps = 7/137 (5%) Frame = +3 Query: 333 QPAVDEEEETPEIDIMINNVVCSFSVKCHLNLRQIXLNGVNVEFRRENGMVTMKXXXXXX 512 QP D E E +DI+INNVVCSFSV CHL LR+I L G NVE+RRENGMVTMK Sbjct: 191 QPIADNEHE---LDIVINNVVCSFSVGCHLKLREIALQGSNVEYRRENGMVTMKLRHPYT 247 Query: 513 XXXF---GRQDA*RARAPPV-KIKRR---LLLDVMHAPYRNSALKCASATFV*SMY*ETC 671 GR A + + K+ R L + P R + + TC Sbjct: 248 TASIWSSGRITCTGATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVL-------GTC 300 Query: 672 RMPFGIRIISFSKKYKE 722 MP+ I+I++FS++++E Sbjct: 301 SMPWAIKIVNFSERHRE 317 Score = 71.3 bits (167), Expect = 1e-12 Identities = 32/38 (84%), Positives = 34/38 (89%) Frame = +2 Query: 509 TTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGF 622 TTASIWSSGR+TCTGATSE AK+AARRYAR L KLGF Sbjct: 247 TTASIWSSGRITCTGATSESMAKVAARRYARCLGKLGF 284 >AJ238442-1|CAB41475.1| 537|Drosophila melanogaster TBP-like factor protein. Length = 537 Score = 79.8 bits (188), Expect = 4e-15 Identities = 55/137 (40%), Positives = 73/137 (53%), Gaps = 7/137 (5%) Frame = +3 Query: 333 QPAVDEEEETPEIDIMINNVVCSFSVKCHLNLRQIXLNGVNVEFRRENGMVTMKXXXXXX 512 QP D E E +DI+INNVVCSFSV CHL LR+I L G NVE+RRENGMVTMK Sbjct: 96 QPIADNEHE---LDIVINNVVCSFSVGCHLKLREIALQGSNVEYRRENGMVTMKLRHPYT 152 Query: 513 XXXF---GRQDA*RARAPPV-KIKRR---LLLDVMHAPYRNSALKCASATFV*SMY*ETC 671 GR A + + K+ R L + P R + + TC Sbjct: 153 TASIWSSGRITCTGATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVL-------GTC 205 Query: 672 RMPFGIRIISFSKKYKE 722 MP+ I+I++FS++++E Sbjct: 206 SMPWAIKIVNFSERHRE 222 Score = 71.3 bits (167), Expect = 1e-12 Identities = 32/38 (84%), Positives = 34/38 (89%) Frame = +2 Query: 509 TTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGF 622 TTASIWSSGR+TCTGATSE AK+AARRYAR L KLGF Sbjct: 152 TTASIWSSGRITCTGATSESMAKVAARRYARCLGKLGF 189 >AF136569-1|AAD28784.1| 632|Drosophila melanogaster TATA box binding protein-relatedfactor 2 protein. Length = 632 Score = 79.8 bits (188), Expect = 4e-15 Identities = 55/137 (40%), Positives = 73/137 (53%), Gaps = 7/137 (5%) Frame = +3 Query: 333 QPAVDEEEETPEIDIMINNVVCSFSVKCHLNLRQIXLNGVNVEFRRENGMVTMKXXXXXX 512 QP D E E +DI+INNVVCSFSV CHL LR+I L G NVE+RRENGMVTMK Sbjct: 191 QPIADNEHE---LDIVINNVVCSFSVGCHLKLREIALQGSNVEYRRENGMVTMKLRHPYT 247 Query: 513 XXXF---GRQDA*RARAPPV-KIKRR---LLLDVMHAPYRNSALKCASATFV*SMY*ETC 671 GR A + + K+ R L + P R + + TC Sbjct: 248 TASIWSSGRITCTGATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVL-------GTC 300 Query: 672 RMPFGIRIISFSKKYKE 722 MP+ I+I++FS++++E Sbjct: 301 SMPWAIKIVNFSERHRE 317 Score = 71.3 bits (167), Expect = 1e-12 Identities = 32/38 (84%), Positives = 34/38 (89%) Frame = +2 Query: 509 TTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGF 622 TTASIWSSGR+TCTGATSE AK+AARRYAR L KLGF Sbjct: 247 TTASIWSSGRITCTGATSESMAKVAARRYARCLGKLGF 284 >AE014298-1172|AAF46368.2| 632|Drosophila melanogaster CG18009-PD, isoform D protein. Length = 632 Score = 79.8 bits (188), Expect = 4e-15 Identities = 55/137 (40%), Positives = 73/137 (53%), Gaps = 7/137 (5%) Frame = +3 Query: 333 QPAVDEEEETPEIDIMINNVVCSFSVKCHLNLRQIXLNGVNVEFRRENGMVTMKXXXXXX 512 QP D E E +DI+INNVVCSFSV CHL LR+I L G NVE+RRENGMVTMK Sbjct: 191 QPIADNEHE---LDIVINNVVCSFSVGCHLKLREIALQGSNVEYRRENGMVTMKLRHPYT 247 Query: 513 XXXF---GRQDA*RARAPPV-KIKRR---LLLDVMHAPYRNSALKCASATFV*SMY*ETC 671 GR A + + K+ R L + P R + + TC Sbjct: 248 TASIWSSGRITCTGATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVL-------GTC 300 Query: 672 RMPFGIRIISFSKKYKE 722 MP+ I+I++FS++++E Sbjct: 301 SMPWAIKIVNFSERHRE 317 Score = 71.3 bits (167), Expect = 1e-12 Identities = 32/38 (84%), Positives = 34/38 (89%) Frame = +2 Query: 509 TTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGF 622 TTASIWSSGR+TCTGATSE AK+AARRYAR L KLGF Sbjct: 247 TTASIWSSGRITCTGATSESMAKVAARRYARCLGKLGF 284 >AE014298-1171|AAF46369.3| 632|Drosophila melanogaster CG18009-PA, isoform A protein. Length = 632 Score = 79.8 bits (188), Expect = 4e-15 Identities = 55/137 (40%), Positives = 73/137 (53%), Gaps = 7/137 (5%) Frame = +3 Query: 333 QPAVDEEEETPEIDIMINNVVCSFSVKCHLNLRQIXLNGVNVEFRRENGMVTMKXXXXXX 512 QP D E E +DI+INNVVCSFSV CHL LR+I L G NVE+RRENGMVTMK Sbjct: 191 QPIADNEHE---LDIVINNVVCSFSVGCHLKLREIALQGSNVEYRRENGMVTMKLRHPYT 247 Query: 513 XXXF---GRQDA*RARAPPV-KIKRR---LLLDVMHAPYRNSALKCASATFV*SMY*ETC 671 GR A + + K+ R L + P R + + TC Sbjct: 248 TASIWSSGRITCTGATSESMAKVAARRYARCLGKLGFPTRFLNFRIVNVL-------GTC 300 Query: 672 RMPFGIRIISFSKKYKE 722 MP+ I+I++FS++++E Sbjct: 301 SMPWAIKIVNFSERHRE 317 Score = 71.3 bits (167), Expect = 1e-12 Identities = 32/38 (84%), Positives = 34/38 (89%) Frame = +2 Query: 509 TTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGF 622 TTASIWSSGR+TCTGATSE AK+AARRYAR L KLGF Sbjct: 247 TTASIWSSGRITCTGATSESMAKVAARRYARCLGKLGF 284 >U35147-1|AAA79092.1| 354|Drosophila melanogaster TATA-box binding protein protein. Length = 354 Score = 58.4 bits (135), Expect = 9e-09 Identities = 25/38 (65%), Positives = 33/38 (86%) Frame = +2 Query: 509 TTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGF 622 TTA I+SSG++ CTGA SED +++AAR+YAR +QKLGF Sbjct: 224 TTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGF 261 >U11718-1|AAA68629.1| 353|Drosophila melanogaster TATA-box binding protein protein. Length = 353 Score = 58.4 bits (135), Expect = 9e-09 Identities = 25/38 (65%), Positives = 33/38 (86%) Frame = +2 Query: 509 TTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGF 622 TTA I+SSG++ CTGA SED +++AAR+YAR +QKLGF Sbjct: 223 TTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGF 260 >M38388-1|AAA28926.1| 353|Drosophila melanogaster TATA-consensus-binding transcriptionfactor TFII protein. Length = 353 Score = 58.4 bits (135), Expect = 9e-09 Identities = 25/38 (65%), Positives = 33/38 (86%) Frame = +2 Query: 509 TTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGF 622 TTA I+SSG++ CTGA SED +++AAR+YAR +QKLGF Sbjct: 223 TTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGF 260 >M38082-1|AAA28931.1| 353|Drosophila melanogaster TATA-box binding protein protein. Length = 353 Score = 58.4 bits (135), Expect = 9e-09 Identities = 25/38 (65%), Positives = 33/38 (86%) Frame = +2 Query: 509 TTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGF 622 TTA I+SSG++ CTGA SED +++AAR+YAR +QKLGF Sbjct: 223 TTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGF 260 >AY069663-1|AAL39808.1| 353|Drosophila melanogaster LD44083p protein. Length = 353 Score = 58.4 bits (135), Expect = 9e-09 Identities = 25/38 (65%), Positives = 33/38 (86%) Frame = +2 Query: 509 TTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGF 622 TTA I+SSG++ CTGA SED +++AAR+YAR +QKLGF Sbjct: 223 TTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGF 260 >AE013599-3256|AAF46754.1| 353|Drosophila melanogaster CG9874-PA protein. Length = 353 Score = 58.4 bits (135), Expect = 9e-09 Identities = 25/38 (65%), Positives = 33/38 (86%) Frame = +2 Query: 509 TTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGF 622 TTA I+SSG++ CTGA SED +++AAR+YAR +QKLGF Sbjct: 223 TTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGF 260 >X70838-1|CAA50186.1| 224|Drosophila melanogaster TBP-related factor protein. Length = 224 Score = 47.2 bits (107), Expect = 2e-05 Identities = 21/37 (56%), Positives = 29/37 (78%) Frame = +2 Query: 512 TASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGF 622 TA I+ +G+V CTGA +E +A I +R++AR LQKLGF Sbjct: 96 TALIFRTGKVICTGARNEIEADIGSRKFARILQKLGF 132 Score = 36.3 bits (80), Expect = 0.043 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%) Frame = +3 Query: 321 LAPTQPAVDEEEETPEIDIMINNVVCSFSVKCHLNLRQIXLNGVNVEF--RRENGMV 485 L P QP E + + +I + N+V +FSV C L+L+ I N E+ +R G++ Sbjct: 31 LQPQQPVALVEPKDAQHEIRLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVI 87 >X70837-1|CAA50185.1| 224|Drosophila melanogaster TBP-related factor protein. Length = 224 Score = 47.2 bits (107), Expect = 2e-05 Identities = 21/37 (56%), Positives = 29/37 (78%) Frame = +2 Query: 512 TASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGF 622 TA I+ +G+V CTGA +E +A I +R++AR LQKLGF Sbjct: 96 TALIFRTGKVICTGARNEIEADIGSRKFARILQKLGF 132 Score = 36.3 bits (80), Expect = 0.043 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%) Frame = +3 Query: 321 LAPTQPAVDEEEETPEIDIMINNVVCSFSVKCHLNLRQIXLNGVNVEF--RRENGMV 485 L P QP E + + +I + N+V +FSV C L+L+ I N E+ +R G++ Sbjct: 31 LQPQQPVALVEPKDAQHEIRLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVI 87 >AY128483-1|AAM75076.1| 224|Drosophila melanogaster RE61442p protein. Length = 224 Score = 47.2 bits (107), Expect = 2e-05 Identities = 21/37 (56%), Positives = 29/37 (78%) Frame = +2 Query: 512 TASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGF 622 TA I+ +G+V CTGA +E +A I +R++AR LQKLGF Sbjct: 96 TALIFRTGKVICTGARNEIEADIGSRKFARILQKLGF 132 Score = 36.3 bits (80), Expect = 0.043 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%) Frame = +3 Query: 321 LAPTQPAVDEEEETPEIDIMINNVVCSFSVKCHLNLRQIXLNGVNVEF--RRENGMV 485 L P QP E + + +I + N+V +FSV C L+L+ I N E+ +R G++ Sbjct: 31 LQPQQPVALVEPKDAQHEIRLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVI 87 >AE014134-1392|AAF52600.1| 224|Drosophila melanogaster CG7562-PA protein. Length = 224 Score = 47.2 bits (107), Expect = 2e-05 Identities = 21/37 (56%), Positives = 29/37 (78%) Frame = +2 Query: 512 TASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGF 622 TA I+ +G+V CTGA +E +A I +R++AR LQKLGF Sbjct: 96 TALIFRTGKVICTGARNEIEADIGSRKFARILQKLGF 132 Score = 36.3 bits (80), Expect = 0.043 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%) Frame = +3 Query: 321 LAPTQPAVDEEEETPEIDIMINNVVCSFSVKCHLNLRQIXLNGVNVEF--RRENGMV 485 L P QP E + + +I + N+V +FSV C L+L+ I N E+ +R G++ Sbjct: 31 LQPQQPVALVEPKDAQHEIRLQNIVATFSVNCELDLKAINSRTRNSEYSPKRFRGVI 87 >AE014134-2459|AAF53372.1| 377|Drosophila melanogaster CG16876-PA protein. Length = 377 Score = 31.5 bits (68), Expect = 1.2 Identities = 17/56 (30%), Positives = 27/56 (48%) Frame = +3 Query: 237 QCPNTYVPDHEYCETTAQTPSQRQAITELAPTQPAVDEEEETPEIDIMINNVVCSF 404 QC + YVP+ E E T +R + ++ A+D+++E I I V C F Sbjct: 280 QCSDGYVPE-ESGEATGVLSCRRTLLDQILGLNEAIDDDDELNPWTIPIIGVACGF 334 >BT021949-1|AAX51654.1| 819|Drosophila melanogaster LD12033p protein. Length = 819 Score = 30.7 bits (66), Expect = 2.1 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Frame = +1 Query: 130 VNHSVVVMATLIQENGIKELSKGTHGVVANHGISTHSVPTH---MCQTMNIAR 279 V HSVV + +Q +G+++ G G G +T+S P + +C+ +N+ R Sbjct: 380 VRHSVVGLVNFLQHHGVRKAQDGISG--GGSGGTTNSNPKYKISLCRDLNVRR 430 >AE014296-2720|AAF49474.1| 819|Drosophila melanogaster CG16807-PA protein. Length = 819 Score = 30.7 bits (66), Expect = 2.1 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Frame = +1 Query: 130 VNHSVVVMATLIQENGIKELSKGTHGVVANHGISTHSVPTH---MCQTMNIAR 279 V HSVV + +Q +G+++ G G G +T+S P + +C+ +N+ R Sbjct: 380 VRHSVVGLVNFLQHHGVRKAQDGISG--GGSGGTTNSNPKYKISLCRDLNVRR 430 >AY069725-1|AAL39870.1| 321|Drosophila melanogaster LP03067p protein. Length = 321 Score = 29.1 bits (62), Expect = 6.5 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Frame = +1 Query: 46 LLSFSKNENLNSYSHQNIKIYNQCWKGDVN--HSVVVMATLIQENGIKELSKGTHGVVAN 219 LLS K L + + I + G V+ VVV T+ +N ++ + + N Sbjct: 37 LLSNGKPVILTNQEREEIATVQEIKPGKVHVVQEVVVPPTVKSDNKVRVTRSVSDSGIPN 96 Query: 220 HGISTHSVPTH 252 HGI +P H Sbjct: 97 HGIPNPGIPNH 107 >AE014296-2375|AAF49748.1| 321|Drosophila melanogaster CG7924-PA protein. Length = 321 Score = 29.1 bits (62), Expect = 6.5 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Frame = +1 Query: 46 LLSFSKNENLNSYSHQNIKIYNQCWKGDVN--HSVVVMATLIQENGIKELSKGTHGVVAN 219 LLS K L + + I + G V+ VVV T+ +N ++ + + N Sbjct: 37 LLSNGKPVILTNQEREEIATVQEIKPGKVHVVQEVVVPPTVKSDNKVRVTRSVSDSGIPN 96 Query: 220 HGISTHSVPTH 252 HGI +P H Sbjct: 97 HGIPNPGIPNH 107 Database: fruitfly Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 24,988,368 Number of sequences in database: 53,049 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 31,819,283 Number of Sequences: 53049 Number of extensions: 663960 Number of successful extensions: 2256 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2120 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2256 length of database: 24,988,368 effective HSP length: 83 effective length of database: 20,585,301 effective search space used: 3273062859 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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