Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021819
(728 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10401-8|AAA19055.1| 340|Caenorhabditis elegans Tata-binding pr... 57 1e-08
L07754-1|AAA03582.1| 340|Caenorhabditis elegans TATA-box bindin... 57 1e-08
AF303249-1|AAG50207.1| 340|Caenorhabditis elegans transcription... 57 1e-08
Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical pr... 52 4e-07
AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like fact... 52 4e-07
AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like fact... 52 4e-07
AC024751-1|ABF71719.1| 261|Caenorhabditis elegans Hypothetical ... 29 3.4
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr... 28 7.9
U80839-7|AAB37915.1| 306|Caenorhabditis elegans Hypothetical pr... 28 7.9
U52003-5|AAG00057.1| 730|Caenorhabditis elegans P granule abnor... 28 7.9
U52003-4|ABB51171.1| 771|Caenorhabditis elegans P granule abnor... 28 7.9
AF077868-1|AAC36100.1| 730|Caenorhabditis elegans PGL-1 protein. 28 7.9
AC025722-2|AAK68508.1| 605|Caenorhabditis elegans Hypothetical ... 28 7.9
>U10401-8|AAA19055.1| 340|Caenorhabditis elegans Tata-binding
protein protein 1 protein.
Length = 340
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/39 (61%), Positives = 34/39 (87%)
Frame = +2
Query: 509 TTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGFE 625
TTA I+SSG++ CTGA SE+ +++AAR+YAR +QKLGF+
Sbjct: 212 TTALIFSSGKMVCTGAKSEEASRLAARKYARIVQKLGFQ 250
>L07754-1|AAA03582.1| 340|Caenorhabditis elegans TATA-box binding
protein protein.
Length = 340
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/39 (61%), Positives = 34/39 (87%)
Frame = +2
Query: 509 TTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGFE 625
TTA I+SSG++ CTGA SE+ +++AAR+YAR +QKLGF+
Sbjct: 212 TTALIFSSGKMVCTGAKSEEASRLAARKYARIVQKLGFQ 250
>AF303249-1|AAG50207.1| 340|Caenorhabditis elegans transcription
factor TFIID protein.
Length = 340
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/39 (61%), Positives = 34/39 (87%)
Frame = +2
Query: 509 TTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGFE 625
TTA I+SSG++ CTGA SE+ +++AAR+YAR +QKLGF+
Sbjct: 212 TTALIFSSGKMVCTGAKSEEASRLAARKYARIVQKLGFQ 250
>Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical
protein F39H11.2 protein.
Length = 505
Score = 52.0 bits (119), Expect = 4e-07
Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 13/177 (7%)
Frame = +3
Query: 225 HIHTQCPNTYVPDHEYCETTAQTPSQRQA-----ITELAPTQPAVDEEEETPE---IDIM 380
H P YVP + PS + ++ P + EE P+ IDI
Sbjct: 207 HAQQPHPQIYVPRDMNLAVPLREPSPEPIPVKIEVPDVPPEGTSAANEEPMPDDGDIDIQ 266
Query: 381 INNVVCSFSVKCHLNLRQIXLNGVNVEFRRENG-MVTMKXXXXXXXXXFGRQD----A*R 545
I NVVC++++ H++LR++ +N NV + RE G M+ K + R
Sbjct: 267 IRNVVCNYTLPLHIDLRKLAMNTHNVTYEREKGVMMKQKRSPGCYIKVYSSGKVYIVGCR 326
Query: 546 ARAPPVKIKRRLLLDVMHAPYRNSALKCASATFV*SMY*ETCRMPFGIRIISFSKKY 716
+ A + R + V + + + + + TCR+PFGI+I + KY
Sbjct: 327 SEADCKRAARSIARHVQRVMGKTKE-RVSIRNYRVNNVLATCRLPFGIKIEEVAAKY 382
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 521 IWSSGRVTCTGATSEDQAKIAARRYARALQKL 616
++SSG+V G SE K AAR AR +Q++
Sbjct: 314 VYSSGKVYIVGCRSEADCKRAARSIARHVQRV 345
>AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like factor
protein.
Length = 454
Score = 52.0 bits (119), Expect = 4e-07
Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 13/177 (7%)
Frame = +3
Query: 225 HIHTQCPNTYVPDHEYCETTAQTPSQRQA-----ITELAPTQPAVDEEEETPE---IDIM 380
H P YVP + PS + ++ P + EE P+ IDI
Sbjct: 207 HAQQPHPQIYVPRDMNLAVPLREPSPEPIPVKIEVPDVPPEGTSAANEEPMPDDGDIDIQ 266
Query: 381 INNVVCSFSVKCHLNLRQIXLNGVNVEFRRENG-MVTMKXXXXXXXXXFGRQD----A*R 545
I NVVC++++ H++LR++ +N NV + RE G M+ K + R
Sbjct: 267 IRNVVCNYTLPLHIDLRKLAMNTHNVTYEREKGVMMKQKRSPGCYIKVYSSGKVYIVGCR 326
Query: 546 ARAPPVKIKRRLLLDVMHAPYRNSALKCASATFV*SMY*ETCRMPFGIRIISFSKKY 716
+ A + R + V + + + + + TCR+PFGI+I + KY
Sbjct: 327 SEADCKRAARSIARHVQRVMGKTKE-RVSIRNYRVNNVLATCRLPFGIKIEEVAAKY 382
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 521 IWSSGRVTCTGATSEDQAKIAARRYARALQKL 616
++SSG+V G SE K AAR AR +Q++
Sbjct: 314 VYSSGKVYIVGCRSEADCKRAARSIARHVQRV 345
>AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like factor
protein.
Length = 505
Score = 52.0 bits (119), Expect = 4e-07
Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 13/177 (7%)
Frame = +3
Query: 225 HIHTQCPNTYVPDHEYCETTAQTPSQRQA-----ITELAPTQPAVDEEEETPE---IDIM 380
H P YVP + PS + ++ P + EE P+ IDI
Sbjct: 207 HAQQPHPQIYVPRDMNLAVPLREPSPEPIPVKIEVPDVPPEGTSAANEEPMPDDGDIDIQ 266
Query: 381 INNVVCSFSVKCHLNLRQIXLNGVNVEFRRENG-MVTMKXXXXXXXXXFGRQD----A*R 545
I NVVC++++ H++LR++ +N NV + RE G M+ K + R
Sbjct: 267 IRNVVCNYTLPLHIDLRKLAMNTHNVTYEREKGVMMKQKRSPGCYIKVYSSGKVYIVGCR 326
Query: 546 ARAPPVKIKRRLLLDVMHAPYRNSALKCASATFV*SMY*ETCRMPFGIRIISFSKKY 716
+ A + R + V + + + + + TCR+PFGI+I + KY
Sbjct: 327 SEADCKRAARSIARHVQRVMGKTKE-RVSIRNYRVNNVLATCRLPFGIKIEEVAAKY 382
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 521 IWSSGRVTCTGATSEDQAKIAARRYARALQKL 616
++SSG+V G SE K AAR AR +Q++
Sbjct: 314 VYSSGKVYIVGCRSEADCKRAARSIARHVQRV 345
>AC024751-1|ABF71719.1| 261|Caenorhabditis elegans Hypothetical
protein Y18H1A.14 protein.
Length = 261
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = -1
Query: 569 DLHWWRPCTSRVLTTKSKPSLRPAQLHRYHPILTSKF--YINTI--QXNLSQVQVALNTK 402
D HW R + + +K L P Q+HR P K+ + TI + L+++++ +N
Sbjct: 98 DAHWERRKIIAIRSDDTKTVLEPLQIHRATPHNLCKYVTLVGTIVLEEELTELELLVNGH 157
Query: 401 TA 396
TA
Sbjct: 158 TA 159
>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
protein T23F1.5 protein.
Length = 1262
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 10/52 (19%)
Frame = +3
Query: 243 PNTYVPDHEYCET-------TAQTPSQR-QAITELAPTQP--AVDEEEETPE 368
P+T+ PD +Y ET TAQT S R A T ++P + EE+TPE
Sbjct: 596 PSTFPPDEDYHETTTDTVRPTAQTISTRFTAPTTTTTSKPVESTTTEEDTPE 647
>U80839-7|AAB37915.1| 306|Caenorhabditis elegans Hypothetical
protein ZC204.9 protein.
Length = 306
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 76 NSYSHQNIKIYNQCWKGDVNHSVVVMATLIQENGIKEL 189
NS SH+N I+ + W N + A L+ NG+++L
Sbjct: 216 NSLSHKNRNIFMRQWINGSNPRLQYFAMLMGFNGVQQL 253
>U52003-5|AAG00057.1| 730|Caenorhabditis elegans P granule
abnormality protein 1,isoform a protein.
Length = 730
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 351 EEETPEIDIMINNVVCSFSVKCHLNLRQIXLNGVNVE 461
EE + E+DI+ +NVV +F C L+Q+ L+G E
Sbjct: 180 EETSDEVDIIRDNVVNAFD-SCKPLLKQLMLDGPKSE 215
>U52003-4|ABB51171.1| 771|Caenorhabditis elegans P granule
abnormality protein 1,isoform b protein.
Length = 771
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 351 EEETPEIDIMINNVVCSFSVKCHLNLRQIXLNGVNVE 461
EE + E+DI+ +NVV +F C L+Q+ L+G E
Sbjct: 221 EETSDEVDIIRDNVVNAFD-SCKPLLKQLMLDGPKSE 256
>AF077868-1|AAC36100.1| 730|Caenorhabditis elegans PGL-1 protein.
Length = 730
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 351 EEETPEIDIMINNVVCSFSVKCHLNLRQIXLNGVNVE 461
EE + E+DI+ +NVV +F C L+Q+ L+G E
Sbjct: 180 EETSDEVDIIRDNVVNAFD-SCKPLLKQLMLDGPKSE 215
>AC025722-2|AAK68508.1| 605|Caenorhabditis elegans Hypothetical
protein Y50D4C.3 protein.
Length = 605
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +3
Query: 144 GGHGDAHPREWY*RAEQGHPRGSGKP-WHIHTQCPNTYVPDHEYCETTAQTPSQRQAI 314
G G PR +Q H + +G P W + QC T+ + Y T + R AI
Sbjct: 532 GNFGHQEPRN----VQQSHQQQTGGPQWRVGAQCLATWTDGNLYPATVTELLPNRTAI 585
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,179,018
Number of Sequences: 27780
Number of extensions: 326241
Number of successful extensions: 1000
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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