Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021819
(728 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13445.1 68416.m01691 transcription initiation factor IID-1 (... 56 2e-08
At1g55520.2 68414.m06352 transcription initiation factor IID-2 (... 54 7e-08
At1g55520.1 68414.m06351 transcription initiation factor IID-2 (... 54 7e-08
At3g24610.1 68416.m03091 kelch repeat-containing F-box family pr... 31 0.59
At2g22630.1 68415.m02682 MADS-box protein (AGL17) nearly identic... 31 0.78
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea... 31 1.0
At3g24260.1 68416.m03047 hypothetical protein 30 1.8
At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger) fa... 28 5.5
At1g31470.1 68414.m03853 nodulin-related weak similarity to nodu... 28 5.5
At2g26135.1 68415.m03136 zinc finger (C3HC4-type RING finger) fa... 28 7.3
At1g45160.1 68414.m05177 protein kinase family protein contains ... 28 7.3
At5g54070.1 68418.m06731 heat shock transcription factor family ... 27 9.6
>At3g13445.1 68416.m01691 transcription initiation factor IID-1
(TFIID-1) / TATA-box factor 1 / TATA sequence-binding
protein 1 (TBP1) identical to Swiss-Prot:P28147
transcription initiation factor TFIID-1 (TATA-box factor
1)(TATA sequence-binding protein 1) (TBP-1) [Arabidopsis
thaliana]
Length = 200
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/38 (65%), Positives = 33/38 (86%)
Frame = +2
Query: 509 TTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGF 622
TTA I++SG++ CTGA SED +K+AAR+YAR +QKLGF
Sbjct: 69 TTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGF 106
>At1g55520.2 68414.m06352 transcription initiation factor IID-2
(TFIID-2) / TATA-box factor 2 / TATA sequence-binding
protein 2 (TBP2) identical to
Swiss-Prot:P28148|TF22_ARATH Transcription initiation
factor TFIID-2 (TATA-box factor 2) (TATA
sequence-binding protein 2) (TBP-2) [Arabidopsis
thaliana]
Length = 200
Score = 54.4 bits (125), Expect = 7e-08
Identities = 24/38 (63%), Positives = 32/38 (84%)
Frame = +2
Query: 509 TTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGF 622
TTA I++SG++ CTGA SE +K+AAR+YAR +QKLGF
Sbjct: 69 TTALIFASGKMVCTGAKSEHLSKLAARKYARIVQKLGF 106
>At1g55520.1 68414.m06351 transcription initiation factor IID-2
(TFIID-2) / TATA-box factor 2 / TATA sequence-binding
protein 2 (TBP2) identical to
Swiss-Prot:P28148|TF22_ARATH Transcription initiation
factor TFIID-2 (TATA-box factor 2) (TATA
sequence-binding protein 2) (TBP-2) [Arabidopsis
thaliana]
Length = 200
Score = 54.4 bits (125), Expect = 7e-08
Identities = 24/38 (63%), Positives = 32/38 (84%)
Frame = +2
Query: 509 TTASIWSSGRVTCTGATSEDQAKIAARRYARALQKLGF 622
TTA I++SG++ CTGA SE +K+AAR+YAR +QKLGF
Sbjct: 69 TTALIFASGKMVCTGAKSEHLSKLAARKYARIVQKLGF 106
>At3g24610.1 68416.m03091 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 445
Score = 31.5 bits (68), Expect = 0.59
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -2
Query: 289 CAVVSQYSWSGTYVLGHCVWICHGLPLPRGCPCSAL*YHSL 167
CA +S W G +LG C W CH + L YHS+
Sbjct: 397 CAEISLERWEGGEILGRCDW-CHPILAINLLTVDPLFYHSM 436
>At2g22630.1 68415.m02682 MADS-box protein (AGL17) nearly identical
to MADS-box protein AGL17 [Arabidopsis thaliana]
GI:862648
Length = 227
Score = 31.1 bits (67), Expect = 0.78
Identities = 18/81 (22%), Positives = 36/81 (44%)
Frame = -1
Query: 614 VSVRRVHNVEQQSSLDLHWWRPCTSRVLTTKSKPSLRPAQLHRYHPILTSKFYINTIQXN 435
+SV+ + N+E Q + L R ++LT + K R L + + S+ Q N
Sbjct: 118 LSVKELQNIESQLEMSLRGIRMKREQILTNEIKELTRKRNLVHHENLELSRKVQRIHQEN 177
Query: 434 LSQVQVALNTKTAHDIVYHDI 372
+ + A T + + +H++
Sbjct: 178 VELYKKAYGTSNTNGLGHHEL 198
>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 473
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 276 ETTAQTPSQRQAITELAPTQPAVDEEEETPEIDIMINNVVCSFSVK--CHLNLRQIXLN 446
ETT+ + +R + PA DEEE++ +D +IN + ++ H N RQ N
Sbjct: 6 ETTSSSHHRRLTFASFLNSDPAADEEEQSHGVDDIINPSSSNKNINKDVHHNYRQSQSN 64
>At3g24260.1 68416.m03047 hypothetical protein
Length = 374
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +3
Query: 288 QTPSQRQAITELA-PTQPAVDEEEETPEIDIMINN--VVCSFSVKCHLNLRQIXLNGVNV 458
+ P +++ TE A P + +EE+TP ++NN VV S+ ++ NL I + N
Sbjct: 202 ERPLKKRRKTERATPNYKLIPKEEQTPVSSTVLNNTWVVNSYDIQAQKNLTDIEKDMYNW 261
Query: 459 E 461
E
Sbjct: 262 E 262
>At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 398
Score = 28.3 bits (60), Expect = 5.5
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +1
Query: 640 LSCSQCIRKHVECHLAYGSYLS 705
+ CS+C+++H+E L GS ++
Sbjct: 181 MCCSECVKRHIEVRLLEGSLIT 202
>At1g31470.1 68414.m03853 nodulin-related weak similarity to
nodule-specific protein Nlj70 [Lotus japonicus]
GI:3329366
Length = 546
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = -3
Query: 282 SSRNIHGLAHMCWDTVCGYAMVCHYPVGALAQLFNTILLDERRHDHHGVIHISFPTLIIY 103
SS N++ L + V +A + YPV L T D RRHD H ++ +I
Sbjct: 162 SSSNLYLLLNSLVPLVVSFAAL--YPVLTKPSLDTTPDYDSRRHDSHVFTILNVLAVITS 219
Query: 102 FNVLM 88
F++L+
Sbjct: 220 FHLLL 224
>At2g26135.1 68415.m03136 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF01485:IBR domain
Length = 384
Score = 27.9 bits (59), Expect = 7.3
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +1
Query: 646 CSQCIRKHVECHLAYGSYLS 705
CS+C+++H+E L GS ++
Sbjct: 177 CSECVKRHIEVSLLQGSLIT 196
>At1g45160.1 68414.m05177 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 1067
Score = 27.9 bits (59), Expect = 7.3
Identities = 21/92 (22%), Positives = 39/92 (42%)
Frame = +3
Query: 150 HGDAHPREWY*RAEQGHPRGSGKPWHIHTQCPNTYVPDHEYCETTAQTPSQRQAITELAP 329
HG+ RE Y A+Q P S +P + EY + + P + ++
Sbjct: 344 HGNNAAREGYAAAKQEFP--SHEPQFDSKVVEQRFYLSDEYEDKMSNEPGKELGGSDYVI 401
Query: 330 TQPAVDEEEETPEIDIMINNVVCSFSVKCHLN 425
+ EEE P + ++ +C+++ KC +N
Sbjct: 402 CRIC---EEEVPLFHLEPHSYICAYADKCEIN 430
>At5g54070.1 68418.m06731 heat shock transcription factor family
protein contains Pfam profile: PF00447 HSF-type
DNA-binding domain
Length = 331
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 339 AVDEEEETPEIDIMINNVVCSFSVKCHLNLRQIXLNGVNVE 461
A+ E PE DI++NN S + +C LN + ++G +++
Sbjct: 285 AMAATEHNPEPDILVNNQ--SGNTRCQLNSEDLLVDGGSMD 323
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,205,314
Number of Sequences: 28952
Number of extensions: 299453
Number of successful extensions: 854
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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