Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021818
         (779 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    29   0.032
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    25   0.68 
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    24   1.6  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   2.1  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    21   8.4  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   8.4  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 29.5 bits (63), Expect = 0.032
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 258 WKYQSRASRNRLHI*LRQSLKTCILLC*GP*PWPNPSRLRLGLRSS 121
           WK +++     L      SL TC +LC  P  WP P  ++L  R S
Sbjct: 46  WKCENQKCVKYLVEDEETSLATCNMLCSEPAIWPKPVHIKLTNRES 91


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -2

Query: 433 DADNFRTLQLPRDVGHYVHSISTTDTNTQSTKATS 329
           D  +     LP+ +  YVH I  T       KATS
Sbjct: 477 DVQHVINYDLPKSIDEYVHRIGRTGRVGNKGKATS 511


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 204 SLKTCILLC*GP*PWPNPS 148
           SL TC +LC     WP P+
Sbjct: 78  SLSTCSMLCGSTQLWPQPT 96


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 544 PGVDHISCTGMATICNMGAE 603
           P +DH SC+   T+ ++G E
Sbjct: 12  PNIDHNSCSSDDTVLSVGNE 31


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 412 LQLPRDVGHYVHSISTTDTN 353
           LQ PR VG Y     +TD N
Sbjct: 1   LQYPRSVGVYGAPYPSTDQN 20


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 557 WSTPGPWYSTMAPV 516
           +S PGP YST + V
Sbjct: 297 YSAPGPTYSTWSTV 310


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,201
Number of Sequences: 336
Number of extensions: 4377
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)