Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021816X
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    63   2e-11
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    28   0.77 
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    28   1.0  
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p...    27   2.3  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   3.1  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    26   3.1  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    26   4.1  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    25   5.4  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    25   7.2  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.5  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    25   9.5  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    25   9.5  

>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 63.3 bits (147), Expect = 2e-11
 Identities = 32/87 (36%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
 Frame = +3

Query: 258 IYLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITI--HDK 431
           +YL  L   N+ LFY  ++ ++ EM+PI+YTPT G A ++F  +YR P G ++ I  +D 
Sbjct: 74  LYLSQLSVTNQTLFYALISQHLIEMIPIIYTPTEGDAIKQFSDIYRYPEGCYLDIDHNDL 133

Query: 432 GHVYDVLKNWPETD-VRAIVVTDGERI 509
            ++   L  + ++D V  I++TD E I
Sbjct: 134 SYIKQQLSEFGKSDSVEYIIITDSEGI 160



 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 22/46 (47%), Positives = 27/46 (58%)
 Frame = +1

Query: 79  LSGLDHLKHPGLNKGMAFTIEERQLLGIHGLLPPRVKTQEEQVELC 216
           L G+  L  P  NK  AFT EERQ   I   LPP V+T ++QV+ C
Sbjct: 13  LKGVTLLNSPRYNKDTAFTPEERQKFEISSRLPPIVETLQQQVDRC 58


>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 344 HNWHHFSHVIRDETVEQMLIAVQEPHKIDVLLSGFSYLSIESLHSSTCSS 195
           H W  +SHVI        L  +     + +     S L+I  LHS+T  S
Sbjct: 224 HGWFDYSHVISRFNEVPALYVISGVILVSIAFFNVSGLAITKLHSATTRS 273


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
 Frame = -1

Query: 518 PDPDTFSVGYNNGTDVRLRPVLKNIVYMSLIVDRDEEAPWSAVHKPELLTGQANRRSVHN 339
           P P T S   N+GT      +++  +  +L   +DE   W A + P L T   +      
Sbjct: 341 PVPYTASYVANSGTLYDYPTLIRLAIRNTLSPSKDEIFNWLAQNVPLLPTFHDSASEAIR 400

Query: 338 WH-HFSHVIRDETVEQMLIAVQEPHKIDVLLSGF 240
           W  +   ++R  ++ Q+    + PH    LL  F
Sbjct: 401 WMVNKGQLVRSGSIYQIATVEEYPHLQPSLLPTF 434


>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
 Frame = -1

Query: 326 SHVIRDETV-EQMLIAVQEPH--KIDVLLSGFSYLSIESLHSSTCSSCVLTRGGNNPCMP 156
           + +++DE+   +ML A+   +  + ++L+   S+L I  +  S C+   L +   N  + 
Sbjct: 188 AELLKDESFGNEMLHAIGSTYVQRANILIQSQSFLGIRGVWGSLCAKGTLLKDTWNTVVS 247

Query: 155 KS*RSSMVKAMPLLRPGCLRWSRPER 78
                S   A+     G  +WS+ +R
Sbjct: 248 AVDVQSSAAALAKAEEGEEQWSKEKR 273


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 226 IDRYENPLNNTSILWGSWTAMSICS--TVSSRITW 324
           + + ++ LN+TS++ G+W  +   S   VS  +TW
Sbjct: 65  VGKGDSHLNHTSVMTGNWNILPYPSFGKVSPNVTW 99


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 399 PRGLFITIHDKGHVYDVLKNWPETDVRA 482
           P GL+I + +K   +D  + W + D RA
Sbjct: 740 PPGLYIPLAEKRTAWDCFERWIQVDPRA 767


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -1

Query: 299 EQMLIAVQEPHKIDVLLSGFSYLSIESLHSSTCSSC 192
           E   +  + PH+I   L  FS + I  +    CS+C
Sbjct: 557 EDQTVLGELPHQIRGFLHNFSLMKISGMAYPQCSAC 592


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 534 HAPKSPRPRYVLRRLQQWH 478
           H PK P  +Y+  + Q+WH
Sbjct: 547 HPPKGPMGKYMTVKEQKWH 565


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 156 GHTRVVTTTSQDARGAG*TMQALDRQI 236
           GH+++VTTT+ D  G+     +LD  I
Sbjct: 87  GHSKIVTTTTFDKNGSRFYTGSLDNTI 113


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 321  VAEMMPIVYTPTVGLACQKFGL 386
            ++ MM  V  P+V LACQ +G+
Sbjct: 4075 MSSMMSTVSLPSVRLACQLYGV 4096


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 360 QPSECTQLASFQPRYPRRNGRTDAHC 283
           QP+EC  + +   RYP  N     +C
Sbjct: 737 QPAECVNILTSTQRYPEANLFAATYC 762


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 472 SVSGQFLRTSYTCPLS 425
           S+SG    T+YTCP++
Sbjct: 178 SISGSLFDTNYTCPVN 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,262
Number of Sequences: 5004
Number of extensions: 52192
Number of successful extensions: 144
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)