Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021816X
         (536 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)             139   2e-33
SB_4260| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.2  
SB_47927| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)                 27   7.3  
SB_31634| Best HMM Match : Peptidase_M2 (HMM E-Value=0)                27   7.3  
SB_29928| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_39250| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)                 27   7.3  
SB_59537| Best HMM Match : Glyco_hydro_35 (HMM E-Value=9.1e-08)        27   9.7  
SB_55543| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_47052| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_39376| Best HMM Match : Alpha-amylase_C (HMM E-Value=0.49)          27   9.7  
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)            27   9.7  

>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score =  139 bits (336), Expect = 2e-33
 Identities = 58/86 (67%), Positives = 75/86 (87%)
 Frame = +3

Query: 252 QYIYLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITIHDK 431
           +YI LM LL+RNE LF+R + D   E+MPIVYTPTVGLAC+K+G+++RRPRGLFI+IHDK
Sbjct: 118 KYIQLMALLERNESLFFRVLFDYTEELMPIVYTPTVGLACRKYGMIFRRPRGLFISIHDK 177

Query: 432 GHVYDVLKNWPETDVRAIVVTDGERI 509
           GH+ D++ NWP T+V+AIV+TDGERI
Sbjct: 178 GHIRDIVSNWPTTEVKAIVMTDGERI 203



 Score = 60.5 bits (140), Expect = 9e-10
 Identities = 29/57 (50%), Positives = 38/57 (66%)
 Frame = +1

Query: 79  LSGLDHLKHPGLNKGMAFTIEERQLLGIHGLLPPRVKTQEEQVELCKLSIDRYENPL 249
           + G D ++   LNKG+AFT+EERQ+LGIHGLLPP V +QE Q +     + R  N L
Sbjct: 60  IRGTDIMRDSHLNKGLAFTLEERQILGIHGLLPPCVISQEIQAQRVYRELQRKPNDL 116


>SB_4260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
 Frame = -1

Query: 260 DVLLSGFSYLSIESLHS-STCSSCVLTRGGNN------PCMPKS*RSSMVKAMPLLRPGC 102
           +++L   +  S  SL S +T +    T   NN      PC  K   S  V+  PL+   C
Sbjct: 328 ELILQKMTQSSANSLISEATLAGMTFTNNRNNIWPTTVPCKTKDSTSDQVEDEPLMTTRC 387

Query: 101 LRWSRPERPLV 69
           LR+ R  R  V
Sbjct: 388 LRFVRKSRSKV 398


>SB_47927| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)
          Length = 512

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = +1

Query: 166 GLLPPRVKTQEEQVELCKLSIDRYENPLNNTSIL---WGSWTAMSICS 300
           GL+P R+   +E+ +  K S+ +    L ++S +   WG+WT+ S+CS
Sbjct: 180 GLVPTRL--HQEEGKHAKESLLKKSIVLCHSSAVDGGWGAWTSWSLCS 225


>SB_31634| Best HMM Match : Peptidase_M2 (HMM E-Value=0)
          Length = 663

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 408 LFITIHDKGHVYDVLKNWPE 467
           L IT H+ GH+Y  LK W +
Sbjct: 364 LIITHHEMGHIYYFLKYWDQ 383


>SB_29928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 340 LCTLRRLAWPVRSSGLCTADQGASSSRSTIRDMYTM 447
           +C  R    PVR+S + T ++   SSR+TI    T+
Sbjct: 165 ICKDRVFMCPVRTSAVVTGEESTLSSRNTISSADTL 200


>SB_39250| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)
          Length = 468

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = +1

Query: 166 GLLPPRVKTQEEQVELCKLSIDRYENPLNNTSIL---WGSWTAMSICS 300
           GL+P R+   +E+ +  K S+ +    L ++S +   WG+WT+ S+CS
Sbjct: 136 GLVPTRL--HQEEGKHAKESLLKKSIVLCHSSAVDGGWGAWTSWSLCS 181


>SB_59537| Best HMM Match : Glyco_hydro_35 (HMM E-Value=9.1e-08)
          Length = 374

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/64 (25%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +3

Query: 141 RASALGHTRVVTTT-SQDARGAG*TMQALDRQIRKST*QYIYLMGLLDRNEHLFYRFVAD 317
           RA  +  ++V++T    DA+    + + L+R   +   + +++  +LDR+ H + R+V  
Sbjct: 180 RAHVMVDSKVISTLCGYDAKKRTFSSKKLERNELELKFEKVHMYAILDRHLHKWKRWVNS 239

Query: 318 NVAE 329
           ++AE
Sbjct: 240 SLAE 243


>SB_55543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +3

Query: 420 IHDKGHVYDVLKNWPETDVRAIVVTDGERIWVWAT 524
           + D+ H +     W   DVR     D  R+W  AT
Sbjct: 20  VTDRNHFFVTFSIWVPVDVRKAANKDWVRVWYCAT 54


>SB_47052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 182 ESRRKRSRLNYASSRSTDTKIHLTIHLS 265
           E+RRK SR N     S+DT  H   H++
Sbjct: 78  EARRKFSRANPVEDESSDTVAHACYHVA 105


>SB_39376| Best HMM Match : Alpha-amylase_C (HMM E-Value=0.49)
          Length = 679

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 514 TQIRSPSVTTMARTSVSGQFLRTSYTCPL 428
           T  R P  + + R  VSG FL  +YTC L
Sbjct: 238 TPSRLPVFSFLVRHPVSGLFLHHNYTCAL 266


>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
          Length = 797

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
 Frame = -3

Query: 534 HAPKSPRPRYVLRRLQQWHGRPSPASS*EHRIHVPYRGS**RGPLVGGTQARTSDRPGQP 355
           H+P++P P Y   R++     P PA +   R+H   R S    P     +   S R   P
Sbjct: 651 HSPRTPLPAYTSPRVRHSPRTPVPAYT-SPRVHQSPRTS---LPAYSTPRVLHSPRTPVP 706

Query: 354 SECTQLASFQPRYPRRNGRT-DAHCGPRAP 268
           +  +      PR P     T   H  PR P
Sbjct: 707 AYTSPRVLHSPRTPLPAYFTPSVHQSPRTP 736


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,536,106
Number of Sequences: 59808
Number of extensions: 458481
Number of successful extensions: 1328
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)