Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021816X
         (536 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   1.5  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   3.5  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    22   3.5  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   3.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.0  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    21   8.0  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.0  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 350 SVHNWHHFSHVIRDETVEQMLIA 282
           SVH+ HH   V RD   E +L+A
Sbjct: 21  SVHHCHHNGVVHRDLKPENLLLA 43


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 220 LSIDRYENPLNNTSILWGSW 279
           LS+D Y+N L+    L G W
Sbjct: 159 LSMDGYQNILDKKDELLGEW 178


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 220 LSIDRYENPLNNTSILWGSW 279
           LS+D Y+N L+    L G W
Sbjct: 159 LSMDGYQNILDKKDELLGEW 178


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 220 LSIDRYENPLNNTSILWGSW 279
           LS+D Y+N L+    L G W
Sbjct: 159 LSMDGYQNILDKKDELLGEW 178


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 194 KRSRLNYASSRSTDTKIHLTIHLSYG 271
           K SR+      STD   H  ++ S+G
Sbjct: 673 KDSRIKTTEKLSTDPNTHFQVNQSHG 698


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -1

Query: 110 PGCLRWSRPERPLV 69
           P   +W  P RP+V
Sbjct: 837 PNLTKWGNPNRPIV 850


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -2

Query: 535 ACAQVAQTQIRSPSVTTMARTSVSGQFLRTSYTCPLS 425
           AC  +     R+ SVT+M +    G    T   C +S
Sbjct: 115 ACGFIDNIDKRNLSVTSMIQKRALGPSFSTGERCRIS 151


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 426 DKGHVYDVLKNW 461
           D+   YDVL++W
Sbjct: 260 DQSETYDVLRSW 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,313
Number of Sequences: 438
Number of extensions: 4277
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)