Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021814X
         (567 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   1.8  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    23   2.4  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   2.4  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   5.6  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   9.7  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   9.7  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 270 YHHFRNLQTQPPRSKH 223
           Y+  R  +T+PPR KH
Sbjct: 232 YYRPRTSRTEPPRRKH 247


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 135 IIIPISN*LLRPLKSYFRLKYRV-*NIVYCCALSVAV 242
           I  P+SN  L P   YFR+ +R   N+  C   S AV
Sbjct: 327 ITAPLSNPPLWPYTMYFRMPHRCHGNLQSCPTRSHAV 363


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 392 HCFILSSLLSQTVTLILG-HFSAITLQ 315
           +C I  +L+S   TL+L  H   I+L+
Sbjct: 257 YCIIAKNLMSNAATLVLNKHIDNISLR 283


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 6/23 (26%), Positives = 13/23 (56%)
 Frame = +1

Query: 253 VPEMVIQKICCLGAGYVGGPTCS 321
           V +++   I C+G  ++  P C+
Sbjct: 90  VADILSGAIACIGFSWIASPACT 112


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -1

Query: 345 IGAFQCYNTAGWTADVTSS*TADFLYHHFRN 253
           I AFQC    GW   + +  T D   +  RN
Sbjct: 87  INAFQCICKEGWEGALCNINTDDCSPNPCRN 117


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 267 HHFRNLQTQPPR 232
           HH  +LQ +PP+
Sbjct: 53  HHHHHLQARPPQ 64


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,091
Number of Sequences: 336
Number of extensions: 2854
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)