Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021814X
         (567 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55023| Best HMM Match : UDPG_MGDP_dh (HMM E-Value=0)                51   8e-07
SB_8522| Best HMM Match : Cytochrom_C1 (HMM E-Value=1.2e-06)           29   2.6  
SB_19939| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.6e-06)           29   3.5  

>SB_55023| Best HMM Match : UDPG_MGDP_dh (HMM E-Value=0)
          Length = 354

 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 20/31 (64%), Positives = 28/31 (90%)
 Frame = +1

Query: 415 YEPGLDDVVRECRGKNLFFSTNIAESIREAD 507
           ++PGL +VVRECRG+NLFFST+I  +I++AD
Sbjct: 43  FQPGLSEVVRECRGRNLFFSTDIDTAIKDAD 73


>SB_8522| Best HMM Match : Cytochrom_C1 (HMM E-Value=1.2e-06)
          Length = 127

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 388 QWNSDKLPIYEPGLDDVVRECRGKNLFFSTN 480
           +W+++K  +Y P +  V+R C G  + F  N
Sbjct: 67  KWSAEKCALYIPNMHYVIRNCCGLRIVFYEN 97


>SB_19939| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.6e-06)
          Length = 410

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 271 QKICCLGAGYVGGPTCSVIALKCPNIKVTVCDKSEERIKQWNSDK 405
           +KI  +G G VG      IA   P+ KVT+ +  E+ I    S+K
Sbjct: 189 EKIVIIGGGPVGVELAGEIANDYPSKKVTIVNAKEQLISNKMSEK 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,459,098
Number of Sequences: 59808
Number of extensions: 352527
Number of successful extensions: 777
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)