Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021814X
(567 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39320.1 68418.m04761 UDP-glucose 6-dehydrogenase, putative v... 138 2e-33
At5g15490.1 68418.m01813 UDP-glucose 6-dehydrogenase, putative v... 138 2e-33
At3g29360.1 68416.m03687 UDP-glucose 6-dehydrogenase, putative v... 137 4e-33
At1g26570.1 68414.m03237 UDP-glucose 6-dehydrogenase, putative s... 134 4e-32
At1g50450.1 68414.m05655 expressed protein 31 0.71
At1g47056.1 68414.m05221 F-box family protein ; similar to SKP1... 29 2.9
At1g13870.1 68414.m01628 expressed protein similar to KTI12 prot... 29 2.9
At2g29620.1 68415.m03598 expressed protein 28 3.8
At2g23370.1 68415.m02791 expressed protein 28 3.8
At5g18430.1 68418.m02171 GDSL-motif lipase/hydrolase family prot... 27 6.6
At4g31860.2 68417.m04527 protein phosphatase 2C, putative / PP2C... 27 6.6
At4g31860.1 68417.m04526 protein phosphatase 2C, putative / PP2C... 27 6.6
At3g16910.1 68416.m02162 AMP-dependent synthetase and ligase fam... 27 8.7
>At5g39320.1 68418.m04761 UDP-glucose 6-dehydrogenase, putative very
strong similarity to SP|Q96558 UDP-glucose
6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase)
(UDP-GlcDH) (UDPGDH) {Glycine max}; contains Pfam
profiles PF03721: UDP-glucose/GDP-mannose dehydrogenase
family NAD binding domain, PF00984:
UDP-glucose/GDP-mannose dehydrogenase family central
domain, PF03720: UDP-glucose/GDP-mannose dehydrogenase
family UDP binding domain
Length = 480
Score = 138 bits (334), Expect = 2e-33
Identities = 60/90 (66%), Positives = 73/90 (81%)
Frame = +1
Query: 274 KICCLGAGYVGGPTCSVIALKCPNIKVTVCDKSEERIKQWNSDKLPIYEPGLDDVVRECR 453
KICC+GAGYVGGPT +VIALKCP+I+V V D S RI WNSD+LPIYEPGLDD+V++CR
Sbjct: 3 KICCIGAGYVGGPTMAVIALKCPDIEVAVVDISVPRINAWNSDQLPIYEPGLDDIVKQCR 62
Query: 454 GKNLFFSTNIAESIREAD*YLYPLTRPTKT 543
GKNLFFST++ + +READ + PTKT
Sbjct: 63 GKNLFFSTDVEKHVREADIVFVSVNTPTKT 92
>At5g15490.1 68418.m01813 UDP-glucose 6-dehydrogenase, putative very
strong similarity to SP|Q96558 UDP-glucose
6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase)
(UDP-GlcDH) (UDPGDH) {Glycine max}; contains Pfam
profiles PF03721: UDP-glucose/GDP-mannose dehydrogenase
family NAD binding domain, PF00984:
UDP-glucose/GDP-mannose dehydrogenase family central
domain, PF03720: UDP-glucose/GDP-mannose dehydrogenase
family UDP binding domain
Length = 480
Score = 138 bits (334), Expect = 2e-33
Identities = 60/90 (66%), Positives = 73/90 (81%)
Frame = +1
Query: 274 KICCLGAGYVGGPTCSVIALKCPNIKVTVCDKSEERIKQWNSDKLPIYEPGLDDVVRECR 453
KICC+GAGYVGGPT +VIALKCP+++V V D S RI WNSD+LPIYEPGLDDVV++CR
Sbjct: 3 KICCIGAGYVGGPTMAVIALKCPSVEVAVVDISVPRINAWNSDQLPIYEPGLDDVVKQCR 62
Query: 454 GKNLFFSTNIAESIREAD*YLYPLTRPTKT 543
GKNLFFST++ + +READ + PTKT
Sbjct: 63 GKNLFFSTDVEKHVREADIVFVSVNTPTKT 92
>At3g29360.1 68416.m03687 UDP-glucose 6-dehydrogenase, putative very
strong similarity to SP|Q96558 UDP-glucose
6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase)
(UDP-GlcDH) (UDPGDH) {Glycine max}; contains Pfam
profiles PF03721: UDP-glucose/GDP-mannose dehydrogenase
family NAD binding domain, PF00984:
UDP-glucose/GDP-mannose dehydrogenase family central
domain, PF03720: UDP-glucose/GDP-mannose dehydrogenase
family UDP binding domain
Length = 480
Score = 137 bits (332), Expect = 4e-33
Identities = 60/90 (66%), Positives = 72/90 (80%)
Frame = +1
Query: 274 KICCLGAGYVGGPTCSVIALKCPNIKVTVCDKSEERIKQWNSDKLPIYEPGLDDVVRECR 453
KICC+GAGYVGGPT +VIALKCP+++V V D S RI WNSD LPIYEPGLDDVV++CR
Sbjct: 3 KICCIGAGYVGGPTMAVIALKCPDVEVAVVDISVPRINAWNSDTLPIYEPGLDDVVKQCR 62
Query: 454 GKNLFFSTNIAESIREAD*YLYPLTRPTKT 543
GKNLFFST++ + +READ + PTKT
Sbjct: 63 GKNLFFSTDVEKHVREADIVFVSVNTPTKT 92
>At1g26570.1 68414.m03237 UDP-glucose 6-dehydrogenase, putative
strong similarity to SP|Q96558 UDP-glucose
6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase)
(UDP-GlcDH) (UDPGDH) {Glycine max}; contains Pfam
profiles PF03721: UDP-glucose/GDP-mannose dehydrogenase
family NAD binding domain, PF00984:
UDP-glucose/GDP-mannose dehydrogenase family central
domain, PF03720: UDP-glucose/GDP-mannose dehydrogenase
family UDP binding domain
Length = 481
Score = 134 bits (324), Expect = 4e-32
Identities = 58/90 (64%), Positives = 72/90 (80%)
Frame = +1
Query: 274 KICCLGAGYVGGPTCSVIALKCPNIKVTVCDKSEERIKQWNSDKLPIYEPGLDDVVRECR 453
KICC+GAGYVGGPT +V+ALKCP I+V V D SE RI WNSD+LPIYEPGL+DVV++CR
Sbjct: 3 KICCIGAGYVGGPTMAVMALKCPEIEVVVVDISEPRINAWNSDRLPIYEPGLEDVVKQCR 62
Query: 454 GKNLFFSTNIAESIREAD*YLYPLTRPTKT 543
GKNLFFST++ + + E+D + PTKT
Sbjct: 63 GKNLFFSTDVEKHVFESDIVFVSVNTPTKT 92
>At1g50450.1 68414.m05655 expressed protein
Length = 428
Score = 30.7 bits (66), Expect = 0.71
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 289 GAGYVGGPTCSVIALKCPNIKVTVCDKSEER 381
G G VGG T + ++ CP +K+ V ++ E+
Sbjct: 46 GTGRVGGSTATALSKLCPELKIVVGGRNREK 76
>At1g47056.1 68414.m05221 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 518
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 268 IQKICCLGAGYVGGPTCSVIALKCPNIKVTVCDKSEERIKQWNSDKLPIYEPGLDDV-VR 444
++++ G G P S IA KCP ++ +C K+ I + L PGL V ++
Sbjct: 364 LERLALCGCDTFGDPELSCIAAKCPALR-KLCIKNCP-ISDVGIENLANGCPGLTKVKIK 421
Query: 445 ECRG 456
+C+G
Sbjct: 422 KCKG 425
>At1g13870.1 68414.m01628 expressed protein similar to KTI12 protein
(SP:P34253) {Saccharomyces cerevisiae}; contains Prosite
PS00070: Aldehyde dehydrogenases cysteine active site
Length = 302
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 352 VTVCDKSEERIKQWNSDKLPIYEPGLDDVVRE 447
V CD E +QWN ++ E G DD + E
Sbjct: 105 VVYCDVDEAHCRQWNKERSDRGEDGYDDGIFE 136
>At2g29620.1 68415.m03598 expressed protein
Length = 747
Score = 28.3 bits (60), Expect = 3.8
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -2
Query: 368 LSQTVTLILGHFSAITLQ-VGPPT*PAPKQQIFCITISGTFRHNRHAQSTTINDVLNS 198
L QT +L H S LQ V PP + Q I +GT + N+ T ND NS
Sbjct: 666 LDQTAWEVLDHASNGQLQNVDPPAESSHYQLDGRIYATGTIQENQEGFEVTFNDESNS 723
>At2g23370.1 68415.m02791 expressed protein
Length = 340
Score = 28.3 bits (60), Expect = 3.8
Identities = 20/76 (26%), Positives = 32/76 (42%)
Frame = -2
Query: 488 SAMFVEKNKFLPLHSRTTSSRPGS*IGSLSEFHCFILSSLLSQTVTLILGHFSAITLQVG 309
+A+F K + + LH +R SLSE CFI +Q ++ + T +
Sbjct: 5 AAVFGRKRRLILLHGSRNFARSFCSSSSLSEHECFIKDIAKAQPPKHLMQLLNIFTARGK 64
Query: 308 PPT*PAPKQQIFCITI 261
P KQ + +TI
Sbjct: 65 SIVSPGAKQGLLPLTI 80
>At5g18430.1 68418.m02171 GDSL-motif lipase/hydrolase family protein
similar to family II lipase EXL1 GI:15054382 from
[Arabidopsis thaliana]; contains Pfam profile PF00657:
GDSL-like Lipase/Acylhydrolase
Length = 362
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 265 VIQKICCLGAG-YVGGPTCSVIALKCPNIKVTV 360
V K+ C G G Y G C+V++ CPN ++ V
Sbjct: 292 VTSKVACCGQGPYNGMGLCTVLSNLCPNRELYV 324
>At4g31860.2 68417.m04527 protein phosphatase 2C, putative / PP2C,
putative protein phosphatase 2C, Schizosaccharomyces
pombe, PIR2:S54297
Length = 275
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 545 WVFVGRVNGYKY*SASRMLSAMFVEKNKFLPLHSRTTSSRP 423
++ GRVNG + SR + M ++NKFLP + ++ P
Sbjct: 215 FIHAGRVNGSL--NLSRAIGDMEFKQNKFLPSEKQIVTASP 253
>At4g31860.1 68417.m04526 protein phosphatase 2C, putative / PP2C,
putative protein phosphatase 2C, Schizosaccharomyces
pombe, PIR2:S54297
Length = 357
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 545 WVFVGRVNGYKY*SASRMLSAMFVEKNKFLPLHSRTTSSRP 423
++ GRVNG + SR + M ++NKFLP + ++ P
Sbjct: 215 FIHAGRVNGSL--NLSRAIGDMEFKQNKFLPSEKQIVTASP 253
>At3g16910.1 68416.m02162 AMP-dependent synthetase and ligase family
protein similar to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501; identical to cDNA adenosine monophosphate
binding protein 7 AMPBP7 (AMPBP7) GI:20799722
Length = 569
Score = 27.1 bits (57), Expect = 8.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 400 QSSIALSSLRFCRKPLP*YW 341
Q+ +A ++FCR+ LP YW
Sbjct: 512 QNKLAQDIMKFCREKLPAYW 531
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,114,329
Number of Sequences: 28952
Number of extensions: 244737
Number of successful extensions: 528
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -