Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021813
(721 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC630.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.0
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 27 2.7
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po... 27 2.7
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa... 27 2.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.7
SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit ... 27 3.6
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce... 26 4.7
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 8.2
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 25 8.2
>SPAC630.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 166
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 256 RYKGCRCLVDFKMGDRQESSVHHKNRSDS 342
R K CR ++ + R + S+H + RS S
Sbjct: 59 RIKACRTIISAREQQRTQHSIHRRERSSS 87
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 94 QWLIKERLKNAKMTSENLQSL 156
QW+ K + +NA +ENLQ L
Sbjct: 284 QWIAKRKAENANRAAENLQPL 304
>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 263 KAVDALLTSKWATGKNPAFTTRIEVTHYLHRMLLHKLFHRAKKV 394
KAV+ L + +W G+ P+F +E T M + + R +KV
Sbjct: 268 KAVNELQSWEWTFGQTPSFKQHLESTELSVSMDISVVHGRLEKV 311
>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 27.1 bits (57), Expect = 2.7
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = -2
Query: 288 EVNKASTAFVPGNIPRGDLEILSSSLVHSL*AISRLRTLRSLASQTLEVLRSHLCVF*SF 109
EV + T P ++ E+L +LVH R +R AS+ L+ ++HLCV
Sbjct: 19 EVVEEETGSSPLSVEDSLKEVLKRALVHD----GLARGIRE-ASKALDRRQAHLCVLCES 73
Query: 108 FYQPLYVK 85
Q YVK
Sbjct: 74 CDQEAYVK 81
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.1 bits (57), Expect = 2.7
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = -2
Query: 339 VTSILVVNAGFLPVAHFEVNKASTAFVPGNIPRGDLEILSSSLVHSL*AISRLRTLRS 166
+TS VVN+ P+ V +STA +I I SSS+++S IS + S
Sbjct: 3432 ITSSTVVNSS-TPITSSSVLNSSTAIASSSILNSSTPITSSSVLNSSTPISSSTVITS 3488
Score = 25.8 bits (54), Expect = 6.2
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -2
Query: 339 VTSILVVNAGFLPVAHFEVNKASTAFVPGNIPRGDLEILSSSLVHSL*AISRLRTLRS 166
+TS +N P+ V +STA +I I SSS+++S AI+ L S
Sbjct: 3072 ITSSTALNTS-TPITSSSVLNSSTAITSSSIVNSSTPITSSSVLNSSTAITSSSILNS 3128
Score = 25.8 bits (54), Expect = 6.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2
Query: 339 VTSILVVNAGFLPVAHFEVNKASTAFVPGNIPRGDLEILSSSLVHS 202
+TS +VN+ P+ V +STA +I I SSS+++S
Sbjct: 3096 ITSSSIVNSS-TPITSSSVLNSSTAITSSSILNSSTPITSSSILNS 3140
>SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit
Sec62 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 553 IRLEMHMEQVFLDTVDAYVWIYDPKPWYYWVCGILVVFGTITVCNV 690
+ L+++ Q F D + YVW+Y+P P V + V+F + + V
Sbjct: 106 VELQINRNQDFQDDMH-YVWLYEPLP--KRVMALAVLFALVVLALV 148
>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = +1
Query: 91 IQWLIKERLKNAKMTSENLQSLRS-----QRAKSTQSRNGSK 201
++ ++KE L K S +LQSL+S Q+ ++ SR G K
Sbjct: 111 LEAVLKEELHQIKKFSSDLQSLKSSMGERQKQQAAMSRRGKK 152
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -3
Query: 311 DSCRSPILKSTRHLQPLY--LEIFHVVI*KFCLLRWYIRF 198
D C L + L LY LE F ++ + C L WY R+
Sbjct: 1696 DCCTEDDLNNPHLLFTLYKLLERFSLIFLRKCALLWYCRY 1735
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 108 FYQPLYVKFAHVSQNNKTQFSYF*HRAADKA 16
F+ L + FAH + ++ + F+YF R KA
Sbjct: 16 FFSLLILLFAHGASSSSSSFNYFDKRTNGKA 46
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,271
Number of Sequences: 5004
Number of extensions: 48386
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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