Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021813
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43079| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   3e-04
SB_50410| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.31 
SB_58065| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_36159| Best HMM Match : Peptidase_M28 (HMM E-Value=0)               29   5.0  
SB_28545| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_37874| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_43079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 508

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +1

Query: 553 IRLEMHMEQVFLDTVD-AYVWIYDPKPWYYWVCGILVV 663
           ++LE+H EQ+F D  D AYVWIYDP     +  GI+VV
Sbjct: 347 VKLELHEEQIFFDADDEAYVWIYDPVHPKTFAMGIVVV 384


>SB_50410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 576

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 631 WYYWVCGILVVFGTITVC 684
           WYYW+ G +V+F TI +C
Sbjct: 327 WYYWLIGGIVIFSTIMLC 344


>SB_58065| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 600

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 570 YGASFPRYSRCLRLDLRSEALVLLGLRDSGRLWNDHSLQ 686
           Y + FP   + L+ D      +L GLRD  +LW D+ L+
Sbjct: 454 YVSLFPFLLQILKPDSPRLETILKGLRDPDKLWTDYGLR 492


>SB_36159| Best HMM Match : Peptidase_M28 (HMM E-Value=0)
          Length = 771

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 388 LGPVEEFMQKHTMQVMSHFDS 326
           L P E F  KHT+ V +HFDS
Sbjct: 266 LSPEENFPPKHTVLVNAHFDS 286


>SB_28545| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 482 SLHPFHRRSY*SSRIPSFLIYLLILARSQGP 390
           S  PF    Y + ++PSFL Y+ +    +GP
Sbjct: 114 SSFPFRNTRYITIKLPSFLTYVTLFIEERGP 144


>SB_37874| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = -3

Query: 491 LGFSLHPFHR---RSY*SSRIPSFLIYLLILARSQGPSWPC 378
           LG+   P HR   R   +++IP+  +++LI  R +GP W C
Sbjct: 62  LGWRFRPQHRFLERIVCNAKIPNAEVHVLIRRRERGP-WQC 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,060,867
Number of Sequences: 59808
Number of extensions: 372636
Number of successful extensions: 1172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)