Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021813
(721 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70034-11|CAA93853.2| 364|Caenorhabditis elegans Hypothetical p... 48 9e-06
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z68270-9|CAE54911.1| 307|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z74043-10|CAA98542.2| 653|Caenorhabditis elegans Hypothetical p... 29 4.4
Z68121-1|CAA92204.2| 174|Caenorhabditis elegans Hypothetical pr... 28 5.8
AF302237-1|AAG21385.1| 174|Caenorhabditis elegans GATA-type tra... 28 5.8
Z68270-8|CAC35869.1| 309|Caenorhabditis elegans Hypothetical pr... 28 7.7
U00044-5|AAK93857.1| 174|Caenorhabditis elegans Mesoderm and en... 28 7.7
AF302238-1|AAG21386.1| 174|Caenorhabditis elegans GATA-type tra... 28 7.7
>Z70034-11|CAA93853.2| 364|Caenorhabditis elegans Hypothetical
protein C18E9.2a protein.
Length = 364
Score = 47.6 bits (108), Expect = 9e-06
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +1
Query: 553 IRLEMHMEQVFLDTVDAYVWIYDPKPWYYWVCGILVVFGTITVC 684
++L +H Q F+D D YVW++DP P + G+L++ GTI C
Sbjct: 160 VKLLVHEVQAFVDDKDVYVWVFDPTPLMKKIIGVLMLVGTIVGC 203
Score = 37.1 bits (82), Expect = 0.013
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +2
Query: 251 FPGTKAVDALLTSKWATG--KNPAFTTRIEVTHYLHRMLLHKLFHRAKKV 394
F G KAVD L SK+ K+ F TR + HY+ + +LF RAKK+
Sbjct: 47 FSGNKAVDTLWESKYGNKAKKDAMFKTRDDCFHYICELNSKQLFFRAKKL 96
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = +3
Query: 387 RRSL*ASKN*KVNQKRRNPRRSVRAAMKRMERKAK--PAPAR 506
RRS ASK+ ++RR+P +S A KR + ++K PAPAR
Sbjct: 305 RRSPSASKSPPPARRRRSPSQSKSPAPKRAKSRSKSPPAPAR 346
>Z68270-9|CAE54911.1| 307|Caenorhabditis elegans Hypothetical
protein ZC410.7c protein.
Length = 307
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 590 IQSMLTSGFTIRSPGTTGSAGFWSSLERSQFAMFPTLAG 706
I+ + T GF I++ G T + G W S ER A+ ++G
Sbjct: 186 IKQLATEGFGIKNVGRTANTGVWVSNERKLAAIGIAVSG 224
>Z74043-10|CAA98542.2| 653|Caenorhabditis elegans Hypothetical
protein T19B10.3 protein.
Length = 653
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 261 VPGNIPRGDLEILSSSLVHSL*AISRLRTLRSL 163
VPGN P+G + LVHS + +L+TL SL
Sbjct: 381 VPGNSPKGRFGKIKMRLVHS---VEKLKTLTSL 410
>Z68121-1|CAA92204.2| 174|Caenorhabditis elegans Hypothetical
protein T24D3.1 protein.
Length = 174
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -1
Query: 277 GIYSLCTWKYSTW*FRNFVFFVGTFALSHFATAY-SSLVGFSDSGGSPKSS 128
G YS T YS + N+ +V T+A S++ TA SS + S + GSP SS
Sbjct: 32 GTYSFTT-DYSY--YNNYYDYVNTYA-SYYPTAMDSSSLNISSTTGSPNSS 78
>AF302237-1|AAG21385.1| 174|Caenorhabditis elegans GATA-type
transcription factor protein.
Length = 174
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -1
Query: 277 GIYSLCTWKYSTW*FRNFVFFVGTFALSHFATAY-SSLVGFSDSGGSPKSS 128
G YS T YS + N+ +V T+A S++ TA SS + S + GSP SS
Sbjct: 32 GTYSFTT-DYSY--YNNYYDYVNTYA-SYYPTAMDSSSLNISSTTGSPNSS 78
>Z68270-8|CAC35869.1| 309|Caenorhabditis elegans Hypothetical
protein ZC410.7b protein.
Length = 309
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 605 TSGFTIRSPGTTGSAGFWSSLERSQFAMFPTLAG 706
T GF I++ G T + G W S ER A+ ++G
Sbjct: 193 TEGFGIKNVGRTANTGVWVSNERKLAAIGIAVSG 226
>U00044-5|AAK93857.1| 174|Caenorhabditis elegans Mesoderm and
endoderm determinationprotein 2 protein.
Length = 174
Score = 27.9 bits (59), Expect = 7.7
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -1
Query: 277 GIYSLCTWKYSTW*FRNFVFFVGTFALSHFATAY-SSLVGFSDSGGSPKSS 128
G YS T YS + N+ +V T+A S++ TA SS + S + GSP SS
Sbjct: 32 GTYSFTT-DYSY--YNNYYDYVNTYA-SYYPTAMDSSSLNISPTTGSPNSS 78
>AF302238-1|AAG21386.1| 174|Caenorhabditis elegans GATA-type
transcription factor protein.
Length = 174
Score = 27.9 bits (59), Expect = 7.7
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -1
Query: 277 GIYSLCTWKYSTW*FRNFVFFVGTFALSHFATAY-SSLVGFSDSGGSPKSS 128
G YS T YS + N+ +V T+A S++ TA SS + S + GSP SS
Sbjct: 32 GTYSFTT-DYSY--YNNYYDYVNTYA-SYYPTAMDSSSLNISPTTGSPNSS 78
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,731,226
Number of Sequences: 27780
Number of extensions: 271947
Number of successful extensions: 894
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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