Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021813
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    33   0.002
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    33   0.002
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              25   0.95 
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   2.9  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.9  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 33.5 bits (73), Expect = 0.002
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -1

Query: 403 AHRDLLGPVEEFMQKHTMQVMSHFDSCGE-RWILAGRPF*SQQGIYSLCTWKYSTW*FRN 227
           +H  L  PV+EF ++ T+Q+    ++ G  RW LAG         Y  C WK   W    
Sbjct: 176 SHALLKDPVKEFWERRTLQISDGIENIGSIRWELAGTLAVVWIMCY-FCIWKGVKW-TGK 233

Query: 226 FVFFVGTF 203
            V+F   F
Sbjct: 234 VVYFTSLF 241


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 33.5 bits (73), Expect = 0.002
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -1

Query: 403 AHRDLLGPVEEFMQKHTMQVMSHFDSCGE-RWILAGRPF*SQQGIYSLCTWKYSTW*FRN 227
           +H  L  PV+EF ++ T+Q+    ++ G  RW LAG         Y  C WK   W    
Sbjct: 229 SHALLKDPVKEFWERRTLQISDGIENIGSIRWELAGTLAVVWIMCY-FCIWKGVKW-TGK 286

Query: 226 FVFFVGTF 203
            V+F   F
Sbjct: 287 VVYFTSLF 294


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 113 LSFISHCMLNLPTYHKTTKPSFRISDTAXLT 21
           LS +  C++  P+ H  T+PSF +SD    T
Sbjct: 7   LSLLITCLICSPSVHCGTRPSF-VSDEMIAT 36


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 209 TNEEDKISKSPRGIFPGTKAVDAL--LTSKWATGKNPAFTTRIEVTHYLHRMLLHKLF 376
           T E DK+ +SPRG +  +K  D L     +W TGKN   TT  +  +  H ++  + +
Sbjct: 37  TIELDKVLESPRGKYEFSK-YDKLKKKLEEW-TGKN--ITTPWDYYYIYHTLVAEQSY 90


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 692 ETLQTVIVPKTTRIPQT 642
           ETLQTV+  K   +PQ+
Sbjct: 350 ETLQTVVAMKMMHLPQS 366


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 592 TVDAYVWIYDPKPWYYWVCGILVVFGTITV 681
           ++D Y+ I DP  +  WV   + V G   V
Sbjct: 120 SLDRYIHIKDPLRYGRWVTRRIAVAGIAVV 149


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 690 NIANCDRSKDDQNPADPVV 634
           N A+     +D+ P DPVV
Sbjct: 429 NTASGSNEDEDETPLDPVV 447


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,004
Number of Sequences: 438
Number of extensions: 3433
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)