Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021813
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family pr...    29   4.1  
At2g46180.1 68415.m05742 intracellular protein transport protein...    28   5.4  
At3g59190.1 68416.m06599 F-box family protein contains F-box dom...    28   7.2  
At3g23270.1 68416.m02933 regulator of chromosome condensation (R...    27   9.5  
At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138...    27   9.5  

>At1g68920.1 68414.m07887 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 486

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 106 KERLKNAKMTSENLQSLRSQRAKSTQSRNGSKRMYQRRRQN 228
           K+R +N +  SE  QS RSQ+++     NG ++    +  N
Sbjct: 236 KKRKRNGQKNSEAAQSHRSQQSEEEPDNNGDEKRNDEQSPN 276


>At2g46180.1 68415.m05742 intracellular protein transport protein
           USO1-related similar to Intracellular protein transport
           protein USO1 (Swiss-Prot:P25386) [Saccharomyces
           cerevisiae]
          Length = 725

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 88  NIQWLIKERLKNAKMTSENLQSLRSQRAKSTQSRNGSKR 204
           N+Q L++E  K  +   E LQSLR  + K+    N  +R
Sbjct: 215 NLQILLQEERKQNETFKEELQSLRLDKEKTLMESNKVRR 253


>At3g59190.1 68416.m06599 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 388

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -1

Query: 226 FVFFVGTFALSHFATAYSSLVGFSDSGGSPKSSL 125
           F   VG F L    T + S + F D GG P + L
Sbjct: 158 FTIDVGEFFLPKLKTLHLSAISFGDEGGPPFAKL 191


>At3g23270.1 68416.m02933 regulator of chromosome condensation
           (RCC1) family protein contains Pfam domain PF00415:
           Regulator of chromosome condensation (RCC1); similar to
           zinc finger protein (GI:15811367) [Arabidopsis
           thaliana]; similar to chromosome condensation regulator
           protein (GI:22770461) [Cicer arietinum]
          Length = 1045

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 291 FEVNKASTAFVPGNIPRGDLEI 226
           F V + S  FVP NIPRG   I
Sbjct: 141 FSVGRQSIDFVPSNIPRGRTSI 162


>At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'auxin-independent growth promoter -related'  based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 579

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 199 LSHFATA-YSSLVGFSDSGGSPKSSLRF 119
           LSHF +  + S +  SDS GSPKS + F
Sbjct: 79  LSHFGSGDHESQLQSSDSNGSPKSHMGF 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,005,259
Number of Sequences: 28952
Number of extensions: 257139
Number of successful extensions: 782
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)