Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021812
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 146 2e-35
03_01_0547 + 4093196-4093657,4094267-4095148 146 2e-35
03_01_0544 + 4082528-4082989,4083585-4084466 146 2e-35
03_01_0543 + 4076981-4077442,4078145-4079026 146 2e-35
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 48 6e-06
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 45 5e-05
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 45 5e-05
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 38 0.011
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 29 5.0
06_03_1501 + 30612643-30613310,30613396-30613501,30613732-306139... 29 5.0
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 28 6.6
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 146 bits (354), Expect = 2e-35
Identities = 78/153 (50%), Positives = 101/153 (66%), Gaps = 1/153 (0%)
Frame = -3
Query: 726 DNVGFNVKNVSVKELCRGYVAGDSKNNPPKGCCRFYSSSHCA*PSWSNLKRLHTSLGLPH 547
DNVGFNVKNV+VK+L RGYVA +SK++P K F +S + + + H
Sbjct: 294 DNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASF-TSQVIIMNHPGQIGNGYAPVLDCH 352
Query: 546 CPH-CLQICRNQRKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 370
H ++ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRF
Sbjct: 353 TSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRF 412
Query: 369 AVRDMRQTVAVGVIKAVNFKEAGGGKVTKAAEK 271
AVRDMRQTVAVGVIK V K+ G KVTKAA K
Sbjct: 413 AVRDMRQTVAVGVIKNVEKKDPTGAKVTKAAAK 445
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 146 bits (354), Expect = 2e-35
Identities = 78/153 (50%), Positives = 101/153 (66%), Gaps = 1/153 (0%)
Frame = -3
Query: 726 DNVGFNVKNVSVKELCRGYVAGDSKNNPPKGCCRFYSSSHCA*PSWSNLKRLHTSLGLPH 547
DNVGFNVKNV+VK+L RGYVA +SK++P K F +S + + + H
Sbjct: 294 DNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASF-TSQVIIMNHPGQIGNGYAPVLDCH 352
Query: 546 CPH-CLQICRNQRKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 370
H ++ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRF
Sbjct: 353 TSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRF 412
Query: 369 AVRDMRQTVAVGVIKAVNFKEAGGGKVTKAAEK 271
AVRDMRQTVAVGVIK V K+ G KVTKAA K
Sbjct: 413 AVRDMRQTVAVGVIKNVEKKDPTGAKVTKAAAK 445
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 146 bits (354), Expect = 2e-35
Identities = 78/153 (50%), Positives = 101/153 (66%), Gaps = 1/153 (0%)
Frame = -3
Query: 726 DNVGFNVKNVSVKELCRGYVAGDSKNNPPKGCCRFYSSSHCA*PSWSNLKRLHTSLGLPH 547
DNVGFNVKNV+VK+L RGYVA +SK++P K F +S + + + H
Sbjct: 294 DNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASF-TSQVIIMNHPGQIGNGYAPVLDCH 352
Query: 546 CPH-CLQICRNQRKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 370
H ++ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRF
Sbjct: 353 TSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRF 412
Query: 369 AVRDMRQTVAVGVIKAVNFKEAGGGKVTKAAEK 271
AVRDMRQTVAVGVIK V K+ G KVTKAA K
Sbjct: 413 AVRDMRQTVAVGVIKNVEKKDPTGAKVTKAAAK 445
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 146 bits (354), Expect = 2e-35
Identities = 78/153 (50%), Positives = 101/153 (66%), Gaps = 1/153 (0%)
Frame = -3
Query: 726 DNVGFNVKNVSVKELCRGYVAGDSKNNPPKGCCRFYSSSHCA*PSWSNLKRLHTSLGLPH 547
DNVGFNVKNV+VK+L RGYVA +SK++P K F +S + + + H
Sbjct: 294 DNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASF-TSQVIIMNHPGQIGNGYAPVLDCH 352
Query: 546 CPH-CLQICRNQRKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 370
H ++ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRF
Sbjct: 353 TSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRF 412
Query: 369 AVRDMRQTVAVGVIKAVNFKEAGGGKVTKAAEK 271
AVRDMRQTVAVGVIK V K+ G KVTKAA K
Sbjct: 413 AVRDMRQTVAVGVIKNVEKKDPTGAKVTKAAAK 445
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 48.4 bits (110), Expect = 6e-06
Identities = 20/63 (31%), Positives = 37/63 (58%)
Frame = -3
Query: 507 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 328
++++TGK+++ P+ + S A++ + K +CVE F LGR +R T+AVG++
Sbjct: 588 LEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLRSQGNTIAVGIV 647
Query: 327 KAV 319
V
Sbjct: 648 SRV 650
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 45.2 bits (102), Expect = 5e-05
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = -3
Query: 498 RTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 328
+ GK ++ P+ +KS A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 615 KAGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 45.2 bits (102), Expect = 5e-05
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = -3
Query: 498 RTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 328
+ GK ++ P+ +KS A+V + P+CV+ F + LGR +R T+AVGV+
Sbjct: 615 KAGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 37.5 bits (83), Expect = 0.011
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -3
Query: 489 KSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 361
K + P +K+G + + + +C+E+F +FP LGRF +R
Sbjct: 373 KKPKRKPLFVKNGAVVVCRIQVNNLICIENFSDFPQLGRFTLR 415
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 110 NYKIMLHYKPCKKYRKGMSL*P-FFPSK 190
N M PCKK +KGM++ P FF SK
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684
>06_03_1501 +
30612643-30613310,30613396-30613501,30613732-30613934,
30614211-30614502
Length = 422
Score = 28.7 bits (61), Expect = 5.0
Identities = 24/86 (27%), Positives = 36/86 (41%)
Frame = -1
Query: 623 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKLTVVLVNLLKSTQNPSSLEMQ 444
F + + +HP + PV+ HT + KFA+ + V +T PSS
Sbjct: 67 FLPRNLQTSHPAKAPPASLPVI--HTVYHYAKFAKYYSEEEAV------TTAMPSSSSPD 118
Query: 443 PLSTWYLPSLYV*SPSRNSHPSVVLL 366
L W+LP V S +VV+L
Sbjct: 119 VLYLWHLPDPKVCGDSHGKSQTVVVL 144
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.3 bits (60), Expect = 6.6
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +2
Query: 278 AALVTLPPPASLKLT-ALMTPTATVCLMSRTAKRPRGGNSWKDSTHRGLEGTKLTMAASP 454
A + L PA + A+ P TV + T ++ RG K +GL G KLT S
Sbjct: 266 ALIYPLVSPAVVSCDIAIAYPMPTVNPVESTPRKGRGRPRKKPVEIKGLSGIKLTEDLST 325
Query: 455 DLMDFGLTSVDLPVRR 502
L LT ++ +R
Sbjct: 326 ALSPIALTCMEPKKKR 341
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,985,064
Number of Sequences: 37544
Number of extensions: 394539
Number of successful extensions: 1063
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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