BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV021812 (728 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 173 9e-44 SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 48 6e-06 SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015) 39 0.004 SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.059 SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 29 2.9 SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9 SB_35163| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9 SB_6273| Best HMM Match : MAM (HMM E-Value=0) 29 2.9 SB_2877| Best HMM Match : Hom_end (HMM E-Value=1.1) 29 3.9 SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9) 29 3.9 SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1 SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1 SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) 28 6.7 SB_17904| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7 SB_19127| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7 SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) 28 8.9 SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11) 28 8.9 SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10) 28 8.9 SB_37487| Best HMM Match : RVT_1 (HMM E-Value=0.03) 28 8.9 SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 28 8.9 SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 28 8.9 SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9 SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20) 28 8.9 SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29) 28 8.9 SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9 SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9 SB_50676| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9 SB_49367| Best HMM Match : AAA (HMM E-Value=0) 28 8.9 SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9 SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9 SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9 SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0) 28 8.9 SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9 SB_377| Best HMM Match : IQ (HMM E-Value=0.0002) 28 8.9 >SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) Length = 322 Score = 173 bits (422), Expect = 9e-44 Identities = 89/158 (56%), Positives = 112/158 (70%), Gaps = 1/158 (0%) Frame = -3 Query: 726 DNVGFNVKNVSVKELCRGYVAGDSKNNPPKGCCRFYSSSHCA*PSWSNLKRLHTSLGLPH 547 DNVGFNVKNVSVK++ RG VAGD KNNPPK C + +++ + ++ + H Sbjct: 165 DNVGFNVKNVSVKDIKRGNVAGDFKNNPPKPC-KSFTAQVIVMNHPGEIHAGYSPVLDCH 223 Query: 546 CPH-CLQICRNQRKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 370 H + + K+DRR+GK E NPK IK+GDAA+V ++PSKP+CVE+F EFPPLGRF Sbjct: 224 TAHIACKFDKLLEKIDRRSGKKLEDNPKMIKTGDAAMVEMIPSKPMCVETFTEFPPLGRF 283 Query: 369 AVRDMRQTVAVGVIKAVNFKEAGGGKVTKAAEKATKGK 256 AVRDM+QTVAVGVIK+V+ EA GGK TKAA K KGK Sbjct: 284 AVRDMKQTVAVGVIKSVDKTEAAGGKTTKAATKVIKGK 321 >SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) Length = 547 Score = 48.4 bits (110), Expect = 6e-06 Identities = 19/50 (38%), Positives = 29/50 (58%) Frame = -3 Query: 507 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 358 +D++TGK + P+ IK AI L +C+E F +F +GRF +RD Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLRD 545 >SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015) Length = 80 Score = 39.1 bits (87), Expect = 0.004 Identities = 18/39 (46%), Positives = 26/39 (66%) Frame = -3 Query: 444 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 328 A V L S+P+CVE ++++ LGRF +R T+A GVI Sbjct: 40 AEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78 >SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 695 Score = 35.1 bits (77), Expect = 0.059 Identities = 13/45 (28%), Positives = 26/45 (57%) Frame = -3 Query: 549 HCPHCLQICRNQRKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 415 HC + I + D ++ K+ ++ PK++ SGD ++VP++P Sbjct: 68 HCIYLFHIAKKLEVKDSQSSKNNDLYPKTVPSGDIGTDSVVPNQP 112 >SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) Length = 903 Score = 29.5 bits (63), Expect = 2.9 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = -3 Query: 438 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 349 +++VP++P CV SF EF + +RD+ Q Sbjct: 380 MSVVPAQPQCVASFPEFCAVSVSYIRDLSQ 409 >SB_32456| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 427 Score = 29.5 bits (63), Expect = 2.9 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%) Frame = +2 Query: 80 FQIYYV*PYINYKIMLHYKPCKKYRKGMSL*PFFPSK-H-LSVNEVSQL 220 +QI+Y+ Y KI +H++ K RK + L FFPS H + +SQL Sbjct: 308 YQIFYILEYTG-KISIHWRYLKITRKYLLLLAFFPSALHPICYGNISQL 355 >SB_35163| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 929 Score = 29.5 bits (63), Expect = 2.9 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Frame = -3 Query: 609 HCA*PSWSNLKRLHTSLG--LPHCPHCLQICRNQRKVDRRTGKSTEVNPKSIK 457 H A S+ L TS G LP +C+ CR RK+ +R+ K EV P S K Sbjct: 139 HQAVTSFQVFNSLETSKGKQLPGLENCITACRFGRKL-KRSSKFCEVVPTSNK 190 >SB_6273| Best HMM Match : MAM (HMM E-Value=0) Length = 4272 Score = 29.5 bits (63), Expect = 2.9 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = -3 Query: 645 PPKGCCRFYSSSHCA*PSWSNLKRLHTSLGL 553 PP G C F S C SW N+K + S+GL Sbjct: 1110 PPPGSCDFEQKSLC---SWVNVKNANRSVGL 1137 >SB_2877| Best HMM Match : Hom_end (HMM E-Value=1.1) Length = 1250 Score = 29.1 bits (62), Expect = 3.9 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%) Frame = +1 Query: 457 LDGFWVDFSRF--TSTTVNFSLISANLQAMW 543 L GFW SRF +S+++++SL S +A W Sbjct: 396 LSGFWFSSSRFSRSSSSISYSLSSLRSRASW 426 >SB_43115| Best HMM Match : SapB_1 (HMM E-Value=3.9) Length = 495 Score = 29.1 bits (62), Expect = 3.9 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +2 Query: 317 LTALMTPTATVCLMSRTAKRPRGGNSWKDSTHR 415 LT+L PT L RT +PR G W+ + H+ Sbjct: 409 LTSLNEPTGEDLLFGRTLWKPRFGYLWQSAIHQ 441 >SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1924 Score = 28.7 bits (61), Expect = 5.1 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = +2 Query: 452 PDLMDFGLTSVDLPVRRSTFL*FLQICRQCGQCG 553 PD DF L +D+P +R +L + CG CG Sbjct: 1137 PDCGDFNLQLMDIPTKRKGCASYLHLL--CGNCG 1168 >SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2209 Score = 28.7 bits (61), Expect = 5.1 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Frame = +1 Query: 427 YQVDNGCISRLDGFWVDFSRF--TSTTVNFSLISANLQAMWAVWQSKTG 567 Y ++ + L GFW+ SRF +S++++ SL S +A W + G Sbjct: 505 YFLNMALMRSLSGFWLSSSRFSRSSSSISDSLSSLRSRASWRLLSDVLG 553 >SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) Length = 1097 Score = 28.3 bits (60), Expect = 6.7 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = +2 Query: 332 TPTATVCLMSRTAKRPRGGNSWKDSTHRGLEG 427 TP+ VCL+SR + PR W R + G Sbjct: 282 TPSLYVCLLSRAHRDPRLSTGWSPYEKREVRG 313 >SB_17904| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 284 Score = 28.3 bits (60), Expect = 6.7 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = +1 Query: 457 LDGFWVDFSRF--TSTTVNFSLISANLQAMWAVWQSKTG 567 L GFW SRF +S++++ SL S +A W + + G Sbjct: 202 LSGFWFSSSRFSRSSSSISDSLSSLRSRASWRLLSDELG 240 >SB_19127| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1492 Score = 28.3 bits (60), Expect = 6.7 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = +1 Query: 457 LDGFWVDFSRF--TSTTVNFSLISANLQAMWAVWQSKTG 567 L GFW SRF +S++++ SL S +A W + + G Sbjct: 836 LSGFWFSSSRFSRSSSSISDSLSSLRSRASWRLLSDELG 874 >SB_50612| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26) Length = 904 Score = 27.9 bits (59), Expect = 8.9 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = -3 Query: 438 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 349 ++++P++P CV SF EF + +RD+ Q Sbjct: 381 MSVMPAQPQCVASFPEFCAVSVSYIRDLLQ 410 >SB_48736| Best HMM Match : RVT_1 (HMM E-Value=1.4e-11) Length = 1175 Score = 27.9 bits (59), Expect = 8.9 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -3 Query: 438 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 349 +++ P++P CV SF EF + +RD+ Q Sbjct: 385 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 414 >SB_45778| Best HMM Match : Exo_endo_phos (HMM E-Value=1e-10) Length = 549 Score = 27.9 bits (59), Expect = 8.9 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -3 Query: 438 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 349 +++ P++P CV SF EF + +RD+ Q Sbjct: 389 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 418 >SB_37487| Best HMM Match : RVT_1 (HMM E-Value=0.03) Length = 347 Score = 27.9 bits (59), Expect = 8.9 Identities = 20/68 (29%), Positives = 32/68 (47%) Frame = +2 Query: 362 RTAKRPRGGNSWKDSTHRGLEGTKLTMAASPDLMDFGLTSVDLPVRRSTFL*FLQICRQC 541 + AKR R ++W D H+ + TK AA ++ + +L F +++ CR Sbjct: 27 KKAKRNRSPSAWSDYRHQRNKVTKALRAAHDTYLN-DVIGGNLTANPKKFWGYVRNCRSE 85 Query: 542 GQCGNPRL 565 GQ G P L Sbjct: 86 GQ-GIPAL 92 >SB_29742| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) Length = 1131 Score = 27.9 bits (59), Expect = 8.9 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -3 Query: 438 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 349 +++ P++P CV SF EF + +RD+ Q Sbjct: 1044 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1073 >SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) Length = 892 Score = 27.9 bits (59), Expect = 8.9 Identities = 20/68 (29%), Positives = 32/68 (47%) Frame = +2 Query: 362 RTAKRPRGGNSWKDSTHRGLEGTKLTMAASPDLMDFGLTSVDLPVRRSTFL*FLQICRQC 541 + AKR R ++W D H+ + TK AA ++ + +L F +++ CR Sbjct: 269 KKAKRNRSPSAWSDYRHQRNKVTKALRAAHDTYLN-DVIGGNLTANPKKFWGYVRNCRSE 327 Query: 542 GQCGNPRL 565 GQ G P L Sbjct: 328 GQ-GIPAL 334 >SB_21418| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 887 Score = 27.9 bits (59), Expect = 8.9 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -3 Query: 438 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 349 +++ P++P CV SF EF + +RD+ Q Sbjct: 532 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 561 >SB_10446| Best HMM Match : Exo_endo_phos (HMM E-Value=6.6e-20) Length = 1285 Score = 27.9 bits (59), Expect = 8.9 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -3 Query: 438 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 349 +++ P++P CV SF EF + +RD+ Q Sbjct: 1111 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 1140 >SB_8311| Best HMM Match : RVT_1 (HMM E-Value=3.9e-29) Length = 605 Score = 27.9 bits (59), Expect = 8.9 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -3 Query: 438 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 349 +++ P++P CV SF EF + +RD+ Q Sbjct: 184 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 213 >SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 988 Score = 27.9 bits (59), Expect = 8.9 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -3 Query: 438 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 349 +++ P++P CV SF EF + +RD+ Q Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32 >SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1676 Score = 27.9 bits (59), Expect = 8.9 Identities = 20/68 (29%), Positives = 32/68 (47%) Frame = +2 Query: 362 RTAKRPRGGNSWKDSTHRGLEGTKLTMAASPDLMDFGLTSVDLPVRRSTFL*FLQICRQC 541 + AKR R ++W D H+ + TK AA ++ + +L F +++ CR Sbjct: 521 KKAKRNRSPSAWSDYRHQRNKVTKALRAAHDTYLN-DVIGGNLTANPKKFWGYVRNCRSE 579 Query: 542 GQCGNPRL 565 GQ G P L Sbjct: 580 GQ-GIPAL 586 >SB_50676| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 838 Score = 27.9 bits (59), Expect = 8.9 Identities = 20/68 (29%), Positives = 32/68 (47%) Frame = +2 Query: 362 RTAKRPRGGNSWKDSTHRGLEGTKLTMAASPDLMDFGLTSVDLPVRRSTFL*FLQICRQC 541 + AKR R ++W D H+ + TK AA ++ + +L F +++ CR Sbjct: 469 KKAKRNRSPSAWSDYRHQRNKVTKALRAAHDTYLN-DVIGGNLTANPKKFWGYVRNCRSE 527 Query: 542 GQCGNPRL 565 GQ G P L Sbjct: 528 GQ-GIPAL 534 >SB_49367| Best HMM Match : AAA (HMM E-Value=0) Length = 976 Score = 27.9 bits (59), Expect = 8.9 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%) Frame = -1 Query: 587 QISNGYTPVLDCHTAHIACKFAEI-KEKLTVVLVNLLKSTQN 465 Q GYTP +D T+H+ ++ E ++K +++LK QN Sbjct: 436 QFRKGYTPDIDELTSHLQTRYGEYNRKKRNSFRLSVLKVYQN 477 >SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 270 Score = 27.9 bits (59), Expect = 8.9 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -3 Query: 438 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 349 +++ P++P CV SF EF + +RD+ Q Sbjct: 87 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 116 >SB_36722| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 148 Score = 27.9 bits (59), Expect = 8.9 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -3 Query: 438 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 349 +++ P++P CV SF EF + +RD+ Q Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32 >SB_26322| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 229 Score = 27.9 bits (59), Expect = 8.9 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -3 Query: 438 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 349 +++ P++P CV SF EF + +RD+ Q Sbjct: 3 MSVTPAQPQCVASFPEFSAVSVSYIRDILQ 32 >SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0) Length = 1176 Score = 27.9 bits (59), Expect = 8.9 Identities = 20/68 (29%), Positives = 32/68 (47%) Frame = +2 Query: 362 RTAKRPRGGNSWKDSTHRGLEGTKLTMAASPDLMDFGLTSVDLPVRRSTFL*FLQICRQC 541 + AKR R ++W D H+ + TK AA ++ + +L F +++ CR Sbjct: 605 KKAKRNRSPSAWSDYRHQRNKVTKALRAAHDTYLN-DVIGGNLTANPKKFWGYVRNCRSE 663 Query: 542 GQCGNPRL 565 GQ G P L Sbjct: 664 GQ-GIPAL 670 >SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2235 Score = 27.9 bits (59), Expect = 8.9 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = +1 Query: 457 LDGFWVDFSRF--TSTTVNFSLISANLQAMWAVWQSKTG 567 L GFW SRF +S++++ SL S +A W + + G Sbjct: 812 LSGFWFSSSRFSRSSSSISDSLSSFRSRASWRLLSDELG 850 >SB_377| Best HMM Match : IQ (HMM E-Value=0.0002) Length = 1376 Score = 27.9 bits (59), Expect = 8.9 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Frame = -1 Query: 491 VNLLKSTQNPSSLEMQPLS-TWYLPSLYV*SPSRNSHPSVVLLSVT 357 V+LLK+ ++P + +P S TW +P + V PS + P + ++S + Sbjct: 542 VSLLKTGKHPDK-QTEPCSRTWDIPEIRVTRPSIGTIPEIRVISAS 586 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,032,912 Number of Sequences: 59808 Number of extensions: 456841 Number of successful extensions: 1253 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 1137 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1251 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1949964354 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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