Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021812
(728 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 152 2e-37
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 152 2e-37
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 152 2e-37
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 36 0.022
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 36 0.022
AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 29 3.4
AF385631-1|AAK84832.1| 671|Caenorhabditis elegans serotonin reu... 29 4.5
AC024812-6|AAF59549.2| 671|Caenorhabditis elegans Modulation of... 29 4.5
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 152 bits (369), Expect = 2e-37
Identities = 83/158 (52%), Positives = 102/158 (64%), Gaps = 1/158 (0%)
Frame = -3
Query: 726 DNVGFNVKNVSVKELCRGYVAGDSKNNPPKGCCRFYSSSHCA*PSWSNLKRLHTSLGLPH 547
DNVGFNVKNVSVK++ RG V DSK +P K F++ + +T + H
Sbjct: 272 DNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHP-GQISNGYTPVLDCH 330
Query: 546 CPH-CLQICRNQRKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 370
H + + KVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRF
Sbjct: 331 TAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRF 390
Query: 369 AVRDMRQTVAVGVIKAVNFKEAGGGKVTKAAEKATKGK 256
AVRDMRQTVAVGVIK+V + GKVTK+A+KA K
Sbjct: 391 AVRDMRQTVAVGVIKSVEKSDGSSGKVTKSAQKAAPKK 428
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 152 bits (369), Expect = 2e-37
Identities = 83/158 (52%), Positives = 102/158 (64%), Gaps = 1/158 (0%)
Frame = -3
Query: 726 DNVGFNVKNVSVKELCRGYVAGDSKNNPPKGCCRFYSSSHCA*PSWSNLKRLHTSLGLPH 547
DNVGFNVKNVSVK++ RG V DSK +P K F++ + +T + H
Sbjct: 306 DNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHP-GQISNGYTPVLDCH 364
Query: 546 CPH-CLQICRNQRKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 370
H + + KVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRF
Sbjct: 365 TAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRF 424
Query: 369 AVRDMRQTVAVGVIKAVNFKEAGGGKVTKAAEKATKGK 256
AVRDMRQTVAVGVIK+V + GKVTK+A+KA K
Sbjct: 425 AVRDMRQTVAVGVIKSVEKSDGSSGKVTKSAQKAAPKK 462
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 152 bits (369), Expect = 2e-37
Identities = 83/158 (52%), Positives = 102/158 (64%), Gaps = 1/158 (0%)
Frame = -3
Query: 726 DNVGFNVKNVSVKELCRGYVAGDSKNNPPKGCCRFYSSSHCA*PSWSNLKRLHTSLGLPH 547
DNVGFNVKNVSVK++ RG V DSK +P K F++ + +T + H
Sbjct: 306 DNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHP-GQISNGYTPVLDCH 364
Query: 546 CPH-CLQICRNQRKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 370
H + + KVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRF
Sbjct: 365 TAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRF 424
Query: 369 AVRDMRQTVAVGVIKAVNFKEAGGGKVTKAAEKATKGK 256
AVRDMRQTVAVGVIK+V + GKVTK+A+KA K
Sbjct: 425 AVRDMRQTVAVGVIKSVEKSDGSSGKVTKSAQKAAPKK 462
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = -3
Query: 507 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-V 331
+D++TG+ K +K + I+ L +P +E F+E+P LGRF +RD +T+A+G V
Sbjct: 470 IDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKV 527
Query: 330 IKAV 319
+K V
Sbjct: 528 LKVV 531
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = -3
Query: 507 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 328
+++ G+ + P+ I G +A+V + + +E+F LGR R T+A G++
Sbjct: 526 INKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIV 585
Query: 327 KAV 319
+ V
Sbjct: 586 EKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = -3
Query: 507 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 328
+++ G+ + P+ I G +A+V + + +E+F LGR R T+A G++
Sbjct: 544 INKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIV 603
Query: 327 KAV 319
+ V
Sbjct: 604 EKV 606
>AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical
protein Y75B8A.33 protein.
Length = 341
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -1
Query: 179 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 72
KR NS++F I+ C + F Y++ + +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297
>AF385631-1|AAK84832.1| 671|Caenorhabditis elegans serotonin
reuptake transporter protein.
Length = 671
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 168 CSPFFLRNTFR*MKYRSCMKNCAVNSSSYSCPWW 269
CSP F+ F Y S K + +SY+ PWW
Sbjct: 567 CSPVFISVIFIMTVYNSSFK--PIQMASYTFPWW 598
>AC024812-6|AAF59549.2| 671|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 5 protein.
Length = 671
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 168 CSPFFLRNTFR*MKYRSCMKNCAVNSSSYSCPWW 269
CSP F+ F Y S K + +SY+ PWW
Sbjct: 567 CSPVFISVIFIMTVYNSSFK--PIQMASYTFPWW 598
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,283,151
Number of Sequences: 27780
Number of extensions: 345369
Number of successful extensions: 906
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -