Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021812
(728 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 149 1e-36
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 149 1e-36
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 149 1e-36
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 149 1e-36
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 94 1e-19
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 50 2e-06
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 47 1e-05
At4g27900.2 68417.m04005 expressed protein 32 0.45
At4g27900.1 68417.m04004 expressed protein 32 0.45
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 29 4.2
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ... 29 4.2
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ... 28 7.3
At5g41970.1 68418.m05110 expressed protein contains Pfam profile... 27 9.6
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 149 bits (362), Expect = 1e-36
Identities = 79/153 (51%), Positives = 103/153 (67%), Gaps = 1/153 (0%)
Frame = -3
Query: 726 DNVGFNVKNVSVKELCRGYVAGDSKNNPPKGCCRFYSSSHCA*PSWSNLKRLHTSLGLPH 547
DNVGFNVKNV+VK+L RGYVA +SK++P KG F +S + + + H
Sbjct: 294 DNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANF-TSQVIIMNHPGQIGNGYAPVLDCH 352
Query: 546 CPH-CLQICRNQRKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 370
H ++ K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRF
Sbjct: 353 TSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRF 412
Query: 369 AVRDMRQTVAVGVIKAVNFKEAGGGKVTKAAEK 271
AVRDMRQTVAVGVIK+V+ K+ G KVTKAA K
Sbjct: 413 AVRDMRQTVAVGVIKSVDKKDPTGAKVTKAAVK 445
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 149 bits (362), Expect = 1e-36
Identities = 79/153 (51%), Positives = 103/153 (67%), Gaps = 1/153 (0%)
Frame = -3
Query: 726 DNVGFNVKNVSVKELCRGYVAGDSKNNPPKGCCRFYSSSHCA*PSWSNLKRLHTSLGLPH 547
DNVGFNVKNV+VK+L RGYVA +SK++P KG F +S + + + H
Sbjct: 294 DNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANF-TSQVIIMNHPGQIGNGYAPVLDCH 352
Query: 546 CPH-CLQICRNQRKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 370
H ++ K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRF
Sbjct: 353 TSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRF 412
Query: 369 AVRDMRQTVAVGVIKAVNFKEAGGGKVTKAAEK 271
AVRDMRQTVAVGVIK+V+ K+ G KVTKAA K
Sbjct: 413 AVRDMRQTVAVGVIKSVDKKDPTGAKVTKAAVK 445
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 149 bits (362), Expect = 1e-36
Identities = 79/153 (51%), Positives = 103/153 (67%), Gaps = 1/153 (0%)
Frame = -3
Query: 726 DNVGFNVKNVSVKELCRGYVAGDSKNNPPKGCCRFYSSSHCA*PSWSNLKRLHTSLGLPH 547
DNVGFNVKNV+VK+L RGYVA +SK++P KG F +S + + + H
Sbjct: 294 DNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANF-TSQVIIMNHPGQIGNGYAPVLDCH 352
Query: 546 CPH-CLQICRNQRKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 370
H ++ K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRF
Sbjct: 353 TSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRF 412
Query: 369 AVRDMRQTVAVGVIKAVNFKEAGGGKVTKAAEK 271
AVRDMRQTVAVGVIK+V+ K+ G KVTKAA K
Sbjct: 413 AVRDMRQTVAVGVIKSVDKKDPTGAKVTKAAVK 445
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 149 bits (362), Expect = 1e-36
Identities = 79/153 (51%), Positives = 103/153 (67%), Gaps = 1/153 (0%)
Frame = -3
Query: 726 DNVGFNVKNVSVKELCRGYVAGDSKNNPPKGCCRFYSSSHCA*PSWSNLKRLHTSLGLPH 547
DNVGFNVKNV+VK+L RGYVA +SK++P KG F +S + + + H
Sbjct: 294 DNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANF-TSQVIIMNHPGQIGNGYAPVLDCH 352
Query: 546 CPH-CLQICRNQRKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 370
H ++ K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRF
Sbjct: 353 TSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRF 412
Query: 369 AVRDMRQTVAVGVIKAVNFKEAGGGKVTKAAEK 271
AVRDMRQTVAVGVIK+V+ K+ G KVTKAA K
Sbjct: 413 AVRDMRQTVAVGVIKSVDKKDPTGAKVTKAAVK 445
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 93.9 bits (223), Expect = 1e-19
Identities = 41/73 (56%), Positives = 55/73 (75%)
Frame = -3
Query: 510 KVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGV 331
K+D RTG E PK +K+ +AAI+N+ P+KP+ VE++ +PPLGRFA+RDMRQTV VGV
Sbjct: 32 KIDWRTGHEIEKEPKFLKNSEAAIINMTPTKPMVVEAYSAYPPLGRFAIRDMRQTVGVGV 91
Query: 330 IKAVNFKEAGGGK 292
IK+V K+ G K
Sbjct: 92 IKSVVKKDPSGAK 104
Score = 58.8 bits (136), Expect = 3e-09
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = -1
Query: 602 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKL 504
+NH GQI NGYTPVLDCHT+HIA KF+EI K+
Sbjct: 1 MNHLGQIKNGYTPVLDCHTSHIAVKFSEILTKI 33
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/68 (30%), Positives = 39/68 (57%)
Frame = -3
Query: 531 QICRNQRKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMR 352
+I + ++D +T K + +K+G A + + + +C+E F +FP LGRF +R
Sbjct: 455 EIIELKSQIDLKTRKPMKKKVLFVKNGAAVVCRIQVTNSICIEKFSDFPQLGRFTLRTEG 514
Query: 351 QTVAVGVI 328
+T+AVG +
Sbjct: 515 KTIAVGKV 522
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/77 (27%), Positives = 42/77 (54%)
Frame = -3
Query: 549 HCPHCLQICRNQRKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 370
H + + +D +TG+ T+ +P+ + + +A++ + P+CVE+F E LGR
Sbjct: 587 HAKEAATVVKLVAMLDPKTGQPTKKSPRCLTAKQSAMLEVSLQNPVCVETFSESRALGRV 646
Query: 369 AVRDMRQTVAVGVIKAV 319
+R +TVA+G + +
Sbjct: 647 FLRSSGRTVAMGKVTRI 663
>At4g27900.2 68417.m04005 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.45
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -3
Query: 471 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 379
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At4g27900.1 68417.m04004 expressed protein
Length = 261
Score = 31.9 bits (69), Expect = 0.45
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -3
Query: 471 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 379
PKS+ SG+ + +++V K ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 542 HIACKFAEIKEKLTVVLVNLLKSTQNPSSLEMQPL 438
H+A KF E++++L V+ L S N ++EM L
Sbjct: 505 HLAKKFVEVRQRLNVLAEKSLISFSNWGTIEMHKL 539
>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 725
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = -1
Query: 149 IFYKACN---VTLFYNLYKVIHNI--SETFCYDCKLKC 51
I+ K C+ V LFY ++ N S FCY C+L+C
Sbjct: 619 IYLKPCHIFKVGLFYKEVEIARNDGNSRLFCYICRLRC 656
>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 661
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = -1
Query: 149 IFYKACN---VTLFYNLYKVIHNI--SETFCYDCKLKC 51
I+ K C+ V L+Y ++ N S FCY C+L+C
Sbjct: 579 IYLKPCHIFKVGLYYKEVEIARNDGNSRLFCYTCELRC 616
>At5g41970.1 68418.m05110 expressed protein contains Pfam profile
PF03690: Uncharacterised protein family (UPF0160)
Length = 346
Score = 27.5 bits (58), Expect = 9.6
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = -3
Query: 642 PKGCCRFYSSSHCA*PSWSNLKRLHTSLGLPHCPHCLQICRNQRKVDRRTGKS--TEVNP 469
P R YS++ PS ++K++ T G HC L C R VD+ +G +P
Sbjct: 3 PSSVVRVYSTATSPSPSEISVKKVGTHNGSFHCDEALG-CFMIRLVDKFSGADIVRSRDP 61
Query: 468 KSIKSGDAAI 439
K + DA +
Sbjct: 62 KILAELDAVL 71
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,340,089
Number of Sequences: 28952
Number of extensions: 318807
Number of successful extensions: 886
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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