Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021811
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 59 5e-10
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 46 7e-06
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 42 1e-04
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 37 0.002
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 35 0.010
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 32 0.070
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc... 28 1.1
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 28 1.5
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.6
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 3.5
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 3.5
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 26 4.6
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual 26 6.1
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch... 25 8.1
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 25 8.1
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 59.3 bits (137), Expect = 5e-10
Identities = 39/140 (27%), Positives = 62/140 (44%)
Frame = +2
Query: 287 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKAGRWDRALYTG 466
+ +D+D A ++G+ V N+P AN+ S EL ++ LAR V S L G W++
Sbjct: 131 NQVDLDFAAERGIAVFNSPYANSRSVAELVIGYIISLARQVGDRSLELHRGEWNKVSSGC 190
Query: 467 SELAGKTLAILGLGGSAARWPLGCXXXXXXXXXXXXXXXXXXAPSSIAPRWSWRTFGLLA 646
E+ GKTL I+G G ++ L S S A
Sbjct: 191 WEIRGKTLGIIGYGHIGSQ--LSVLAEAMGLHVVYYDILPIMPLGSAKQLSSLPELLHRA 248
Query: 647 DYITLHTPLIESTRNFINAR 706
D+++LH P T+N I+++
Sbjct: 249 DFVSLHVPASPETKNMISSK 268
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 45.6 bits (103), Expect = 7e-06
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Frame = +2
Query: 287 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKAGRWDRALYTG 466
+N+DVD A + GV V N P + L + R A +L+ G+W + L
Sbjct: 95 NNVDVDWATRNGVYVANTPNGPTEGTANMNLMLFMCTLRGAREAEQSLRLGKWRQNLSLT 154
Query: 467 SELAGKTLAILGLGGSAARW-----PLGC 538
+ GK + I+G+G + PLGC
Sbjct: 155 DDPYGKRVGIIGMGAIGKSFAQKILPLGC 183
>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 41.5 bits (93), Expect = 1e-04
Identities = 21/74 (28%), Positives = 38/74 (51%)
Frame = +2
Query: 287 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKAGRWDRALYTG 466
+N+D+ +A G+ V+ P + + E T L+L L R + A ++ ++ G
Sbjct: 80 NNVDLKAAADNGITVVRVPAYSPYAVAEYTIGLLLSLNRKIHRAYVRVREDDFNLNGLLG 139
Query: 467 SELAGKTLAILGLG 508
+L GKT+ +LG G
Sbjct: 140 HDLHGKTIGLLGTG 153
>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 37.1 bits (82), Expect = 0.002
Identities = 29/143 (20%), Positives = 61/143 (42%), Gaps = 1/143 (0%)
Frame = +2
Query: 287 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKAGRWDRALYTG 466
+N+++ +A + + V++ P + + E T L+L L R + A ++ ++ G
Sbjct: 80 NNVNLKAASEYKITVVHVPSYSPFAVSEFTVGLLLSLNRKIHRAYVRVREDDFNIVGLLG 139
Query: 467 SELAGKTLAILGLGGSAARWPLGCXXXXXXXXXXXXXXXXXXAPSSIAPRWSWRTFGLL- 643
++ GKT+ ++G G + C + ++ + L
Sbjct: 140 CDIHGKTVGVIGTGKIGSN-VAKCFKMGFGCDVLAYDINPDKKLENYGVQFVEQNEVLKK 198
Query: 644 ADYITLHTPLIESTRNFINARCL 712
AD++ LH PL ST + +N+ L
Sbjct: 199 ADFLCLHCPLTPSTTHIVNSDSL 221
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 35.1 bits (77), Expect = 0.010
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = +2
Query: 287 DNIDVDSAGKKGVGVINAPGANALSACELTCTLMLVLARHVVPASTALKAGRWDRALYTG 466
+ +DV + +G+ V + P A + ++ LML R L W+
Sbjct: 92 ETVDVAACTARGIQVSHVPKAVDDATADVGIFLMLGALRGFNQGIFELHKNNWNANCKPS 151
Query: 467 SELAGKTLAILGLGG 511
+ GKTL ILGLGG
Sbjct: 152 HDPEGKTLGILGLGG 166
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 32.3 bits (70), Expect = 0.070
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -2
Query: 510 PPRPRMARVLPASSLPVYRARSHLPAFSAVEAGTTWRARTNINVQVSS-HALSALAPGAL 334
PP + +SSLP + S P+ S++ T+ + +V SS H + P L
Sbjct: 105 PPTRLTSTPSNSSSLPSIPSSSSTPSISSIPHTTSSVSNDIPSVLGSSDHPIDLDNPEHL 164
Query: 333 ITPTPFLPAESTSMLSTPAP 274
P+ F+ A+ S L TP P
Sbjct: 165 TPPSSFITAKQLSRLPTPLP 184
>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/96 (20%), Positives = 39/96 (40%)
Frame = -2
Query: 501 PRMARVLPASSLPVYRARSHLPAFSAVEAGTTWRARTNINVQVSSHALSALAPGALITPT 322
P +L S + ++ S LP F ++ +N+ + S ++L+ L++P
Sbjct: 159 PSSTDLLSPDSQKLSKSSSDLPQFDYPSLNSSPTFNSNLPISSSRFEKTSLSDSKLVSPE 218
Query: 321 PFLPAESTSMLSTPAPARPTTFTSRLRPTPLWSLEL 214
P + + P R TS RP P + ++
Sbjct: 219 PLDDNKDIQFIKKPIYTR----TSEPRPKPAGTFKI 250
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 594 ALISRHERVESDDVHAEGVHPSGHLAADPPRPRMARV 484
A+ HE VE V+ + VH G L DP + R V
Sbjct: 112 AVFDNHEEVEVFPVYRDPVHDFGFLRFDPKKIRYMNV 148
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 1.5
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = -2
Query: 411 TTWRARTNINVQVSSHALSALAPGALITPTPFLPAEST---SMLSTPAPARPTTFTSRLR 241
TT + + + S+L P + + TP A ST S STP + +T T+
Sbjct: 261 TTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSAS 320
Query: 240 PTPLWSLELLNA 205
TPL S+ N+
Sbjct: 321 STPLSSVSSANS 332
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 342 GALITP-TPFLPAESTSMLSTPAPARPTTFT 253
G TP TP +P STS STP P T+ T
Sbjct: 295 GNSTTPVTPTVPPTSTSSTSTPPPPASTSST 325
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 342 GALITP-TPFLPAESTSMLSTPAPARPTTFT 253
G TP TP +P STS STP P T+ T
Sbjct: 349 GNSTTPVTPTVPPTSTSSTSTPPPPASTSST 379
Score = 26.2 bits (55), Expect = 4.6
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 339 ALITP-TPFLPAESTSMLSTPAPARPTTFT-SRLRPTPLWS 223
+L TP TP +P STS S P P T+ T + P P S
Sbjct: 129 SLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTS 169
Score = 25.8 bits (54), Expect = 6.1
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 339 ALITP-TPFLPAESTSMLSTPAPARPTTFT-SRLRPTPLWS 223
+L TP TP +P STS S P P T+ T + P P S
Sbjct: 186 SLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTS 226
Score = 25.8 bits (54), Expect = 6.1
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 339 ALITP-TPFLPAESTSMLSTPAPARPTTFT-SRLRPTPLWS 223
+L TP TP +P STS S P P T+ T + P P S
Sbjct: 242 SLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTS 282
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -2
Query: 462 VYRARSHLPAFSAVEAGTTWRARTNINVQVSSHALSALAPGA 337
+ R R HL + A E T WR + + + LS L P A
Sbjct: 334 IRRLRGHLREYVAWERNTIWREMMAMERRTQAARLSGLKPVA 375
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 3.5
Identities = 24/96 (25%), Positives = 37/96 (38%)
Frame = -2
Query: 519 AADPPRPRMARVLPASSLPVYRARSHLPAFSAVEAGTTWRARTNINVQVSSHALSALAPG 340
AA+P + P S P S +S AG +T ++ A +A P
Sbjct: 310 AAEPSSSTATDIPPPYSTPSVAGASD---YSTPSAGY----QTVQTTTTTTEAAAAQYPQ 362
Query: 339 ALITPTPFLPAESTSMLSTPAPARPTTFTSRLRPTP 232
A P P +P + + ++TP A P + P P
Sbjct: 363 AAFPPPPVMPQPAAAAVTTPV-AAPVAAAAAAVPVP 397
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 26.2 bits (55), Expect = 4.6
Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 17/151 (11%)
Frame = -2
Query: 681 DSMSGVCRVM*SARRPNVLQLHLGAMELGALISRHERVESDDVHAEGVH----PSGHLAA 514
D V V +A P +Q+ G++ LG + + SD++ G P ++
Sbjct: 418 DRFPVVMPVANTAAIPEKVQVRFGSLTLGGEDKKSTKSSSDNIAQSGPRSSYFPKKTVSP 477
Query: 513 DPPRPRMA-RVLPASSLP------VYRAR---SHLPAF---SAVEAGTTWRARTNINVQV 373
P + A +V ++ +P Y +R S +P S V T +R ++N+
Sbjct: 478 KPEAKKEASKVAESTKIPKKQHTSAYESRAPQSKVPENLKESHVNE-TPYRGLHDVNLPA 536
Query: 372 SSHALSALAPGALITPTPFLPAESTSMLSTP 280
S +A S A ++ +PA STS S P
Sbjct: 537 SGNASSVSAIPPQVSAQTTIPAASTSATSGP 567
>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = +1
Query: 586 DQCAQFHCTKMELEDIWPSSGLHH 657
D C HC L+D +P HH
Sbjct: 29 DNCKTIHCISRSLKDEYPRKIKHH 52
>SPCC1259.06 |||transcription factor TFIID complex subunit 8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 375 VSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTT 259
+ S A+S P ++ P PA T M + P RPT+
Sbjct: 117 LGSLAVSQNRPAYVVNHLPPFPASHTYMATPVYPVRPTS 155
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 565 FDPF-VSADQCAQFHCTKMELEDIWPSSGLHHPAHS 669
FDP + AQ H +++ D+W + + HP+ S
Sbjct: 218 FDPIALGVASLAQVHKARLKDSDVWVAVKVQHPSVS 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,914
Number of Sequences: 5004
Number of extensions: 54199
Number of successful extensions: 202
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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