Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021811
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.93 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.2  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   2.9  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    23   2.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 393 TNINVQVSSHALSALAPGALITPTPFLPAESTSMLS 286
           TN+   +++   S ++      P   LPA STS+ S
Sbjct: 833 TNVTTTINTPTTSVISMSGTTVPITSLPASSTSINS 868



 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +1

Query: 430 EGWQVGPGSVHWQRARWQDPRHPWP--WRV 513
           E   V  GS++   A W+ PR  WP  W+V
Sbjct: 559 ESISVDSGSINTV-AEWEPPRALWPTEWKV 587


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 336 LITPTPFLPAESTSMLSTPAPARPTTFTSRLRPTPLWSLELL 211
           ++T T  L AE      T    RP TFT  +R  P+ ++  L
Sbjct: 301 VLTVTAPLGAEIEPSTQTIDFGRPATFTCNVRGNPIKTVSWL 342



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 578  TKGSNPMMFMPKAYILVATSRPTRQGQGWR-GSC 480
            TKGS P++     +I VAT+  T     W  G C
Sbjct: 1456 TKGSKPIIPEAARFIEVATNSITLHLNAWSDGGC 1489


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 284 HQLQHDRPPSLHACVQHLFGHLS 216
           H   HD PP +   +  LF H S
Sbjct: 133 HLAMHDYPPLVSGALHLLFRHFS 155


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 284 HQLQHDRPPSLHACVQHLFGHLS 216
           H   HD PP +   +  LF H S
Sbjct: 101 HLAMHDYPPLVSGALHLLFRHFS 123


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 390 WFWLATWSQLPL 425
           WFW+  ++ LPL
Sbjct: 179 WFWVTPFTVLPL 190


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 390 WFWLATWSQLPL 425
           WFW+  ++ LPL
Sbjct: 179 WFWVTPFTVLPL 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,197
Number of Sequences: 438
Number of extensions: 4235
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)