Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021810
         (674 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000051A90E Cluster: PREDICTED: similar to leucine zi...    34   2.7  
UniRef50_A6C3P0 Cluster: Pentapeptide repeat; n=1; Planctomyces ...    34   2.7  
UniRef50_Q54UI6 Cluster: RNA-directed RNA polymerase; n=2; Dicty...    33   6.3  
UniRef50_P50620 Cluster: Ribonucleoside-diphosphate reductase su...    33   6.3  

>UniRef50_UPI000051A90E Cluster: PREDICTED: similar to leucine
           zipper and CTNNBIP1 domain containing; n=1; Apis
           mellifera|Rep: PREDICTED: similar to leucine zipper and
           CTNNBIP1 domain containing - Apis mellifera
          Length = 192

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = +1

Query: 199 PAV--RYGGRATPSVRTRGNKFTHGYLLQVLRKPIFNVSSQYSLLQLRQIGERLE-QELQ 369
           PAV   +G R T  +R R  +  +   L  + K +F++     L  LRQ+GE+LE QELQ
Sbjct: 92  PAVIRMFGKRETSQLRNRLAEIEYDMKLGKITKEVFDLQRAEVLNALRQLGEKLELQELQ 151


>UniRef50_A6C3P0 Cluster: Pentapeptide repeat; n=1; Planctomyces
           maris DSM 8797|Rep: Pentapeptide repeat - Planctomyces
           maris DSM 8797
          Length = 270

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -2

Query: 523 APKDKKRLENSWKQISTKKTERNTKTLKFIKVVNGLLITPGI 398
           +P  +K+LEN+WK    KK  R  K + F  +   ++I+PG+
Sbjct: 147 SPLSQKQLENNWKTEPVKKLSRGHKIILFSFLTFMVMISPGL 188


>UniRef50_Q54UI6 Cluster: RNA-directed RNA polymerase; n=2;
            Dictyostelium discoideum|Rep: RNA-directed RNA polymerase
            - Dictyostelium discoideum AX4
          Length = 2285

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 19/41 (46%), Positives = 22/41 (53%)
 Frame = -2

Query: 493  SWKQISTKKTERNTKTLKFIKVVNGLLITPGIESFRTHLHN 371
            +W  IS    E N KTL F + V GLL T  I +F T  HN
Sbjct: 1807 AWYFISYSDPE-NDKTLGFYRSVKGLLKTTEINNFETQKHN 1846


>UniRef50_P50620 Cluster: Ribonucleoside-diphosphate reductase
           subunit alpha; n=53; Bacteria|Rep:
           Ribonucleoside-diphosphate reductase subunit alpha -
           Bacillus subtilis
          Length = 700

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = +1

Query: 178 TRDIRNAPAVRYGGRATPSVRTRGNKFTHGYLLQ 279
           T DIRNAPAVR   +A  S+   G    HGYL Q
Sbjct: 442 TTDIRNAPAVRRANKAMKSIGL-GAMNLHGYLAQ 474


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 646,376,695
Number of Sequences: 1657284
Number of extensions: 12168465
Number of successful extensions: 34058
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34045
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)