Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021810
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    28   1.1  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    26   5.7  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    25   10.0 
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   10.0 

>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/75 (25%), Positives = 35/75 (46%)
 Frame = +1

Query: 55  VQGRELFRHGIRLRKSRDDIQVRADIERQGNAHRAR*ASLFTRDIRNAPAVRYGGRATPS 234
           V  R++   G+ +RKS  +  +R D +R   +   R  S  TR  ++ P  R+G  +   
Sbjct: 237 VDQRQILTAGLNIRKSSANNSMRDDKKRNHKSSYKRSLSPSTRYHQDRPDKRHGTYSLEE 296

Query: 235 VRTRGNKFTHGYLLQ 279
           +  +  +F +   LQ
Sbjct: 297 IDKQRKEFENRQRLQ 311


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = +3

Query: 420 PFTTLINFNVFVFRSVFLVLICFQLFSNLFLSFGATIANC*LLWKTSDNKSEWCLRS 590
           P  TLI F  F+F    L+ I  +LF+ LFL  G+T+     +W     +S W L S
Sbjct: 290 PQITLI-FISFLFSFYVLIFIWVRLFARLFLR-GSTLVGS--VWVLP--RSSWVLAS 340


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 514  DKKRLENSWKQISTKKTERNTKTLKFIKVVNGL 416
            D KR+E S KQ   K +   TKT   I V + L
Sbjct: 1207 DSKRIEMSLKQSKIKDSSEITKTFADIAVGSNL 1239


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 617 ISSDSWLYRTPQTPLRL 567
           +SS++WL RT  +PL L
Sbjct: 406 LSSEAWLLRTEMSPLHL 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,459
Number of Sequences: 5004
Number of extensions: 51576
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)