Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021810
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127...    31   1.1  
12_01_0156 + 1188143-1189957                                           30   1.9  
11_01_0158 + 1307648-1309462                                           30   1.9  
03_02_0257 + 6907997-6908504,6909316-6909348,6910163-6910308           30   1.9  
12_01_0234 + 1755704-1756120,1756203-1756313,1756923-1757063,175...    29   4.5  
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602...    28   7.8  
01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480     28   7.8  

>02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,
            1279204-1279336,1279425-1279551,1279788-1280284,
            1280578-1280642,1280722-1280823,1281020-1281162,
            1281761-1281816,1282214-1282869,1282975-1283165,
            1283280-1283574,1283738-1283778,1284082-1284104,
            1284173-1284369,1284472-1284581,1285309-1285639,
            1285968-1286060,1286095-1286166,1286626-1286886
          Length = 1788

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -2

Query: 415  LITPGIESFRTHLHNLVVPARGALRSDVAAISYTDLTH*KLVFLGLA 275
            L   G++ FRT L  L+   + A R + A+  Y  L + K  F GLA
Sbjct: 983  LFNQGLKDFRTPLEELLSVIQNASRKEGASTCYRMLVYLKYCFQGLA 1029


>12_01_0156 + 1188143-1189957
          Length = 604

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 299 KIGFLRTCSK*PWVNLFPRVRTDGVARPPYLTAGAF 192
           K GF+R+  K  WV L   V TD + +P  LT   F
Sbjct: 479 KTGFIRSAKKFRWVKLDDPVDTDKLCQPQALTKFCF 514


>11_01_0158 + 1307648-1309462
          Length = 604

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 299 KIGFLRTCSK*PWVNLFPRVRTDGVARPPYLTAGAF 192
           K GF+R+  K  WV L   V TD + +P  LT   F
Sbjct: 479 KTGFIRSAKKFRWVKLDDPVDTDKLCQPQALTKFCF 514


>03_02_0257 + 6907997-6908504,6909316-6909348,6910163-6910308
          Length = 228

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 549 WKTSDNKSEWCLRSAVQPAVRANS 620
           W T   + +WC R A QPA R +S
Sbjct: 121 WPTRARRRQWCARLAAQPARRGSS 144


>12_01_0234 +
           1755704-1756120,1756203-1756313,1756923-1757063,
           1757142-1757312,1757412-1757616,1757738-1757910,
           1758021-1758103,1758250-1758389,1758569-1758645,
           1758711-1758810,1759978-1760606
          Length = 748

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = -3

Query: 594 PHSSNTTPTCYHSFSTVISN*RSWL----RKIKKGWKTVGNR*ALKKLNGTRK 448
           P ++  T TCYH+ + V S+          K KK  K +GNR A++K    +K
Sbjct: 567 PSATEHTHTCYHTHTRVFSSDDDSCGGDKAKPKKSRKPLGNREAVRKYRQKKK 619


>01_06_0668 +
           31058497-31059510,31059609-31059676,31060189-31060270,
           31060339-31060431,31060516-31060668,31060900-31060968,
           31061091-31061184,31061594-31061677,31062133-31062221,
           31062340-31062456,31062567-31062707,31062823-31063005
          Length = 728

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 13  RALVTQYAFTSRQRVQGRELFRHGIRLRKSRDD 111
           R ++T+ AFT R+ + GR  ++H I      DD
Sbjct: 645 RLMMTERAFTDREGLSGRPWYKHLIYAPSLHDD 677


>01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480
          Length = 623

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 150 SSCTVSQFIHERHSKRASCEVRGARDAVGSYTRE 251
           ++C V+   H R S    C+++G+   VG +  E
Sbjct: 441 NACAVTLLAHARESFSCKCKIKGSHTIVGLWKHE 474


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,705,618
Number of Sequences: 37544
Number of extensions: 346856
Number of successful extensions: 995
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)