Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021810
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56632| Best HMM Match : ABM (HMM E-Value=6.3)                       29   4.5  
SB_18610| Best HMM Match : ABM (HMM E-Value=6.3)                       29   4.5  
SB_15530| Best HMM Match : Retinin_C (HMM E-Value=4.8)                 28   6.0  
SB_975| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.0  
SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)                28   7.9  
SB_42612| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_21963| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_56632| Best HMM Match : ABM (HMM E-Value=6.3)
          Length = 236

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 499 ENSWKQISTKKTERNTKTLKFIKVVNGLLITPGIESFRTHLHNLV 365
           E SW++   K  E  +  +    ++ G+L+TP    F    HNL+
Sbjct: 91  EESWRRSFLKTLEVLSSMINNPLIILGMLLTPSGRKFSRFRHNLI 135


>SB_18610| Best HMM Match : ABM (HMM E-Value=6.3)
          Length = 236

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 499 ENSWKQISTKKTERNTKTLKFIKVVNGLLITPGIESFRTHLHNLV 365
           E SW++   K  E  +  +    ++ G+L+TP    F    HNL+
Sbjct: 91  EESWRRSFLKTLEVLSSMINNPLIILGMLLTPSGRKFSRFRHNLI 135


>SB_15530| Best HMM Match : Retinin_C (HMM E-Value=4.8)
          Length = 210

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +1

Query: 76  RHGIRLRKS-RDDIQVRADIERQGNAHRAR*ASLFTRDIRNAPAVRYGGRATPSVRTRGN 252
           +H IR+    + DI +   +  + N            DIR  P +++    TP VRTR N
Sbjct: 69  QHDIRITPVIQHDIHITPVVRTRYNTTSTSHPWKIQHDIRITPVIQHDNNITPVVRTRYN 128

Query: 253 KFT 261
             T
Sbjct: 129 TTT 131


>SB_975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/17 (52%), Positives = 16/17 (94%)
 Frame = +2

Query: 296 FLMCQVSIAYCSYVRSE 346
           FL+ Q+S+++CSY+RS+
Sbjct: 72  FLLLQISLSWCSYLRSD 88


>SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)
          Length = 299

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
 Frame = -2

Query: 529 IVAPKDKKRLENSWKQIST--KKT---ERNTKTLKFIKVVNGLLITP 404
           I A K KK+L+  WK+I    KKT   +  T+  K+ K +  + +TP
Sbjct: 252 ISAKKLKKKLKRKWKEIDEKGKKTWIKKEKTEMRKYQKKIKEISVTP 298


>SB_42612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 196 APAVRYGGRATPSVRTRGNKFTHGYLLQVLRKPIFNVSS 312
           AP  RY G + P+ +   +K THG  ++V+  P  N SS
Sbjct: 664 APLRRYAGTSLPNDKDSSSKQTHGGTIRVV--PATNFSS 700


>SB_21963| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 504

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 421 GLLITPGIESFRTHLHNLVVPARGALRSDVAAISYTDLT 305
           GL++TPG+     HL    +  +G + S+ AA +   +T
Sbjct: 129 GLVVTPGLVDLCAHLREPGLTQKGNIASETAAAAAAGIT 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,522,840
Number of Sequences: 59808
Number of extensions: 404593
Number of successful extensions: 884
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)