Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021810
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              26   0.38 
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    26   0.38 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   2.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.7  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   6.1  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   6.1  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   6.1  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 438 NFNVFVFRSVFLVLICFQLFSNLFLSFGATIANC 539
           NF++    S+FL+LI F ++SN  ++      NC
Sbjct: 4   NFSIMFIHSIFLILIIF-IYSNETIAQVTDDENC 36


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 438 NFNVFVFRSVFLVLICFQLFSNLFLSFGATIANC 539
           NF++    S+FL+LI F ++SN  ++      NC
Sbjct: 4   NFSIMFIHSIFLILIIF-IYSNETIAQVTDDENC 36


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +1

Query: 193 NAPAVRYGGRATPSVRTRGNKFTHGYLLQVLRKPIFNVSSQY 318
           NAP V      TPS    G    H  +   L K + N+  QY
Sbjct: 407 NAPEVENIWDYTPSSLELGEVAVHDPVFYQLYKKVMNLYQQY 448


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 662 SRVSSCLAAIVVTG*ISSDSWLYRTPQTP 576
           S +S+ L+ +VVT  IS+  WL    + P
Sbjct: 56  SGLSAMLSLVVVTVAISTGEWLLTEEKLP 84


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = -3

Query: 600 VVPHSSNTTPTCYHSFSTVISN 535
           ++  + +  P  YH F TV+++
Sbjct: 156 IIERNGDKPPLTYHQFQTVVAS 177


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/54 (20%), Positives = 21/54 (38%)
 Frame = +2

Query: 347 SASSRNYKVMQMSSERFYTRGNQKTIHNFNKL*CFRVPFSFFSAYLFPTVFQPF 508
           S+ S NY     + ++ Y    +K  +N N +    +P   +     P    P+
Sbjct: 83  SSLSNNYNYNNNNYKKLYCNNYKKLYYNINYIEQIPIPVPIYCGNFPPRPMGPW 136


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/54 (20%), Positives = 21/54 (38%)
 Frame = +2

Query: 347 SASSRNYKVMQMSSERFYTRGNQKTIHNFNKL*CFRVPFSFFSAYLFPTVFQPF 508
           S+ S NY     + ++ Y    +K  +N N +    +P   +     P    P+
Sbjct: 83  SSLSNNYNYNNNNYKKLYCNNYKKLYYNINYIEQIPIPVPIYCGNFPPRPMGPW 136


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/54 (20%), Positives = 21/54 (38%)
 Frame = +2

Query: 347 SASSRNYKVMQMSSERFYTRGNQKTIHNFNKL*CFRVPFSFFSAYLFPTVFQPF 508
           S+ S NY     + ++ Y    +K  +N N +    +P   +     P    P+
Sbjct: 83  SSLSNNYNYNNNNYKKLYCNNYRKLYYNINYIEQIPIPVPIYCGNFPPRPMGPW 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,332
Number of Sequences: 438
Number of extensions: 3398
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)