Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021810
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61260.1 68414.m06904 expressed protein contains similarity t...    29   3.8  
At3g58070.1 68416.m06473 zinc finger (C2H2 type) family protein ...    27   8.7  

>At1g61260.1 68414.m06904 expressed protein contains similarity to
           cotton fiber expressed protein 1 [Gossypium hirsutum]
           gi|3264828|gb|AAC33276
          Length = 344

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 577 HSDLLSLVFHSN*QLAIVAPKDKKRLENSWKQISTKKTERNTKTL 443
           H  L+         L +  PK  + LEN+WK I+  K+   T+ L
Sbjct: 211 HRKLMKASQEGGRALRVTKPKKNETLENTWKMITEGKSTPLTRQL 255


>At3g58070.1 68416.m06473 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 253

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 576 WCLRSAVQPAVRANSAGDYNGGQAGGNSALPL 671
           W L   VQ    +N+A   NG  +  NS LPL
Sbjct: 180 WRLPPRVQGVYNSNAAFTSNGSSSSSNSTLPL 211


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,982,572
Number of Sequences: 28952
Number of extensions: 268440
Number of successful extensions: 713
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)