Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021809
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    29   0.51 
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    29   0.89 
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    28   1.2  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    27   2.1  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   2.7  
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce...    27   3.6  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    26   4.7  
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces...    26   4.7  
SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|...    25   8.3  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   8.3  
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    25   8.3  
SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyce...    25   8.3  

>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -3

Query: 314 KYRGFITSVILFSDIFNYCFGFISP----TVGSPSVRNMMMGSKDRISSLLEDVELAKSS 147
           KYRG +     +  +++YC G + P    +   P+    + GS  RI  +  D+    ++
Sbjct: 287 KYRGTVFPACFYDTLYDYCIGLVDPSGILSAKQPNDACSLYGS--RIDDIYRDIMPPNNN 344

Query: 146 DL 141
           D+
Sbjct: 345 DI 346


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = +3

Query: 420 QLRDFYRQVSSPLLSHVKFVYAPDQVIESRLPRPSSVRTTRGPRWWSPGRS-ITATRDLE 596
           QL DF RQ + P +  +  V      +E     PS+   T     +SP  S I AT  +E
Sbjct: 55  QLEDFLRQETIPFVDKIFDVLREKSYLEGASNMPSTGMVTEEVSRYSPTSSMIPATNSME 114

Query: 597 STVEAS--AAMRTST 635
           +    S  A  +T+T
Sbjct: 115 TNFNNSLPAVGKTNT 129


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = -3

Query: 227 PSVRNMMMGSKDRISSLLEDVELAKSSD----LFLIRSMAVPSAASMLVPPFASSLS 69
           P++   ++ +   ++S+L    L K+ +    L +  S + P+ AS+L PP ++SLS
Sbjct: 582 PTISQGLLAATQPVTSVLNTSPLPKTPEKDRSLNVTPSSSTPTPASVLAPPSSASLS 638


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 405 SDAALQLR-DFYRQVSSPLLSHVKFVYAPDQVIESRLPRPSSVRTTRGPRWWS 560
           S   LQL   F    + PL SH+     P Q+  S +P P+  R+   P ++S
Sbjct: 258 SQTNLQLAPSFAAPQAHPLPSHLSQSNVPPQLSHSSVPSPAPPRSVSQPTYFS 310


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = +1

Query: 13  LKPASKATPENIARAKIIIDRLEANG---GTNIDAALGTAIDLI-RNRSELFANSTSSNK 180
           L+  SK   E ++ AK  I+ L+      G  + +A     D+  R +  +FA+S+S  K
Sbjct: 131 LQEQSKIASEQLSIAKDQIEALQNENSHLGEQVQSAHQALSDIEERKKQHMFASSSSRVK 190

Query: 181 DEILSLE 201
           +EIL  E
Sbjct: 191 EEILVQE 197


>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 19/75 (25%), Positives = 31/75 (41%)
 Frame = +3

Query: 246 NEPKTIIKNVAEKNYGSDEATIFSLAFGEDADPKLLRKLSLRNNGFARHIYEASDAALQL 425
           N P   +KN        D + +F +    D +    R L ++NN FA  + +A +  L  
Sbjct: 177 NSPIDPLKNYIRTRRKMDPSDVFVITTS-DYNGISTRSLLIKNNNFAPFLLDAWNEPLLK 235

Query: 426 RDFYRQVSSPLLSHV 470
              + Q     LSH+
Sbjct: 236 SAGFDQAERSALSHL 250


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
 Frame = +3

Query: 297 DEATIFSLAFGEDADPKLLRKLSLRNNGFARH------IYEASDAALQLRDFYRQVSSPL 458
           DE T+  L   ED D +LL  L    +   RH      +Y   +  + L  F   + S  
Sbjct: 163 DEKTVLVLEDVEDCDRRLLSSLVEALSSLVRHSKLQGCLYTIFNLKIPLEMFDTSLDSKF 222

Query: 459 LSHVK 473
           LS+VK
Sbjct: 223 LSNVK 227


>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 706 VQGVNHFSRRYRNFDFLCDFF 644
           V+G +H    Y NFDFL + F
Sbjct: 147 VKGTDHGINEYANFDFLANVF 167


>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 703 QGVNHFSRRYRNFDFLCDFFPQEVLVLIAAE 611
           +G+ HF +++RN  F     P   LVL+ AE
Sbjct: 149 KGIKHFLKKWRNMFFTFCKSPIFCLVLLKAE 179


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 309  IFSLAFGEDADPKLLRKLSLRNNGFARHIYEASDAALQLRD 431
            IF  AFG+ +D +  +K+S +       + E  D  L+LRD
Sbjct: 956  IFLGAFGDSSDIRDWKKISSQRRVTQLGVVEEFDILLELRD 996


>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +3

Query: 324 FGEDADPKLLRKLSLRNNGFARHIYEASDAALQLRDFYRQVSSPLLSHVKFVYAPDQVIE 503
           FG       + +LS +N     H+Y A +     RD   +VS P+L  +      D + E
Sbjct: 132 FGPTTSCSCVARLSDQNPDVPLHVYVARNGNAIYRDQLSKVSFPVLLLIPTRLGIDSINE 191

Query: 504 S 506
           S
Sbjct: 192 S 192


>SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 633 CSFSSPQKLRRWTRGHASRLSTCP 562
           C +SSPQK  + T    ++++ CP
Sbjct: 103 CVYSSPQKRAKRTAEEITKVANCP 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,736
Number of Sequences: 5004
Number of extensions: 55491
Number of successful extensions: 175
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)