Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021809
(724 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0304 - 16640937-16642877 33 0.30
09_04_0625 - 19044775-19045078,19045178-19045382,19045534-190461... 32 0.53
12_02_0879 + 23960084-23961551,23961796-23962184 31 0.70
11_06_0756 + 26952196-26952264,26952760-26953206,26954009-269553... 31 0.70
01_01_0635 - 4795434-4795461,4795897-4797365 31 0.70
05_07_0073 - 27504169-27504882,27504989-27505161,27505302-275054... 31 1.2
12_02_0126 + 13958247-13958298,13958422-13958972,13959076-13960047 30 2.1
11_06_0207 + 21214631-21216121 30 2.1
02_04_0485 + 23338980-23339187,23339277-23339305,23339962-233400... 30 2.1
02_04_0482 + 23291986-23292181,23292289-23292317,23293500-232936... 30 2.1
01_06_1640 + 38836977-38836988,38837694-38838047,38838164-388382... 29 2.8
10_08_0302 - 16626622-16626624,16626809-16628761,16631452-16631655 29 4.9
05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-38... 28 6.5
04_04_0463 - 25397837-25399693,25402136-25402405 28 6.5
02_01_0030 - 183836-183903,183986-184453,184526-184604,184698-18... 28 6.5
04_03_0760 + 19334338-19334690,19337321-19338008 28 8.6
>10_08_0304 - 16640937-16642877
Length = 646
Score = 32.7 bits (71), Expect = 0.30
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = +1
Query: 25 SKATPENIARAKIIIDRLEANGGTNIDAALGTAIDLIRNRSELFANSTSS 174
S+ T A AK + L A GGTNI AAL A ++ +R L+ N+ S
Sbjct: 227 SRMTDAGKAHAKRAVGSLSARGGTNIGAALRKAAKVLDDR--LYRNAVES 274
>09_04_0625 -
19044775-19045078,19045178-19045382,19045534-19046168,
19046334-19047391
Length = 733
Score = 31.9 bits (69), Expect = 0.53
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -2
Query: 378 RCCGATACARAWDPHPHRKQVKISWLHHFRNS 283
+CC AT C R WD H KIS L R S
Sbjct: 588 QCCSATGCERNWDIFHHIHSRKISRLERSRLS 619
>12_02_0879 + 23960084-23961551,23961796-23962184
Length = 618
Score = 31.5 bits (68), Expect = 0.70
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 1 VKPTLKPASKATPENIARAKIIIDRLEANGGTNIDAALGTAIDLIR--NRSELFANSTSS 174
VKP +K S AT N + KI+ GT I+++ G+ + NR + F ++ +S
Sbjct: 283 VKPKVKETSTATRSNASSQKIVRTLDRKASGTTIESSNGSKVVRATKFNRDKKFRSTVAS 342
Query: 175 NKDEILSLE 201
N ++ ++
Sbjct: 343 NVPKVKEIK 351
>11_06_0756 +
26952196-26952264,26952760-26953206,26954009-26955358,
26955400-26955408
Length = 624
Score = 31.5 bits (68), Expect = 0.70
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +1
Query: 67 IDRLEANGGTNIDAALGTAIDLIRNRSELFANSTSSNKDEILSLEPIIIFLTDGDPTVG 243
IDRL+A GGT + AL A+ ++ R S+++ + I+ LTDGD T G
Sbjct: 152 IDRLQARGGTALMPALEEAVKILDERQ-------GSSRNHV----GFILLLTDGDDTTG 199
>01_01_0635 - 4795434-4795461,4795897-4797365
Length = 498
Score = 31.5 bits (68), Expect = 0.70
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 237 CR*NEPKTIIKNVAEKNYGSDEATIFSLAFGEDADPKLLRKLSLRN-NGFARHIYEASDA 413
C N P ++ + ++ S E I+ A G D D ++ R + +R+ +G A + +DA
Sbjct: 215 CSNNSPSFVVAELERRSCQSSETNIYLFASGSD-DWRVFRNVPIRHGDGLAHLCWWTTDA 273
Query: 414 ALQLRDFY 437
L + Y
Sbjct: 274 VLSYHNRY 281
>05_07_0073 -
27504169-27504882,27504989-27505161,27505302-27505485,
27505604-27505675,27506173-27506733,27506846-27507145
Length = 667
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 384 ARHIYEASDAALQLRDFYRQVSSPLLSHV 470
A + A DA ++ RD+ + SPLLSHV
Sbjct: 470 AGEVASAEDATVRERDYIEPIKSPLLSHV 498
>12_02_0126 + 13958247-13958298,13958422-13958972,13959076-13960047
Length = 524
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/64 (34%), Positives = 35/64 (54%)
Frame = +1
Query: 64 IIDRLEANGGTNIDAALGTAIDLIRNRSELFANSTSSNKDEILSLEPIIIFLTDGDPTVG 243
I+ L ANGGT+I A L + ++ +R +F S ++N L + + T GDPT
Sbjct: 127 IVKSLIANGGTDIKAGLDLGLAVLADR--VFTESRTAN--IFLMSDGKLEGKTSGDPT-- 180
Query: 244 EMNP 255
++NP
Sbjct: 181 QVNP 184
>11_06_0207 + 21214631-21216121
Length = 496
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = +1
Query: 277 LKRITEVMKPRYFHLLSVR--MRIPSSCASCRSATTVLRDTSTRPQTRRCSCATSTDRSP 450
L +++ M F LL + +R S C S RSA T LRD Q C T+
Sbjct: 56 LPELSQDMLMEIFALLEIPDLVRAGSVCQSWRSAYTSLRDMGQYKQQTPCLLYTTESSGE 115
Query: 451 RLCCHMSNLSTHRIR 495
++ C S + R
Sbjct: 116 KVSCLYSLVEKRAFR 130
>02_04_0485 +
23338980-23339187,23339277-23339305,23339962-23340064,
23340311-23340482,23340880-23340940,23341257-23341389,
23341938-23342208,23342595-23342734,23342912-23342998,
23343078-23343586,23343671-23344488,23344522-23344720,
23345552-23345696,23345728-23345782,23347652-23347778,
23347867-23347936,23348448-23348553,23348636-23348747,
23349243-23349365,23349468-23349627,23349751-23349827,
23349925-23349977,23350151-23350205,23350500-23351174
Length = 1495
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = -1
Query: 655 CDFFPQEVLVLIAAEASTVDSRSRVAVIDLPGD--HHLGP-RVVRTELGLGNLLSIT 494
C F P +VL + +S+VD R+ +ID+ + L ++VR EL GNL+S T
Sbjct: 633 CTFEPLDVLTKLLY-SSSVDVSQRILIIDVMTEAAQELAETKIVRRELRHGNLISDT 688
>02_04_0482 +
23291986-23292181,23292289-23292317,23293500-23293602,
23293855-23293979,23294788-23294920,23295468-23295739,
23295806-23295873,23296126-23296265,23296443-23296529,
23296610-23297118,23297203-23298020,23298054-23298252,
23299084-23299228,23299260-23299314,23301184-23301310,
23301399-23301468,23301980-23302085,23302168-23302279,
23302775-23302897,23303000-23303159,23303283-23303359,
23303457-23303509,23303683-23303737,23304032-23304706
Length = 1478
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = -1
Query: 655 CDFFPQEVLVLIAAEASTVDSRSRVAVIDLPGD--HHLGP-RVVRTELGLGNLLSIT 494
C F P +VL + +S+VD R+ +ID+ + L ++VR EL GNL+S T
Sbjct: 616 CTFEPLDVLTKLLY-SSSVDVSQRILIIDVMTEAAQELAETKIVRRELRHGNLISDT 671
>01_06_1640 +
38836977-38836988,38837694-38838047,38838164-38838294,
38838554-38838860,38839036-38839349,38839507-38839645
Length = 418
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/74 (31%), Positives = 31/74 (41%)
Frame = +1
Query: 316 HLLSVRMRIPSSCASCRSATTVLRDTSTRPQTRRCSCATSTDRSPRLCCHMSNLSTHRIR 495
H + +MR+P CA+C+ +L +R CS A T P LC H H R
Sbjct: 332 HFSACKMRVPGGCANCKRIWQLL-----ELHSRMCS-ALETCHVP-LCRHFKEKMQHLSR 384
Query: 496 *SRAGYQDQVPYVL 537
A + V VL
Sbjct: 385 KEEAKWNLLVSKVL 398
>10_08_0302 - 16626622-16626624,16626809-16628761,16631452-16631655
Length = 719
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = +1
Query: 13 LKPASKATPENIARAKIIIDRLEANGGTNIDAALGTAIDLIRNRSE 150
L P K T RA + L A+GGTNI AL A ++ +R E
Sbjct: 309 LFPLRKMTESGRQRALQRVSSLVADGGTNIADALRKAARVMEDRRE 354
>05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-382560,
382705-383481,383572-383645,383757-383819,383919-384007,
384106-384201,384319-384978,385613-385687,386422-386492,
386578-386635,386900-387104,387379-387869
Length = 1193
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +3
Query: 495 VIESRLPRPSSVRTTRGPRWWSPGRSITATRDLESTVEASAAMRTSTS*GKKSQRKSKFR 674
V+ + LP + T G +W R +RD + + + R S+ G+ +RK+K +
Sbjct: 1016 VLSAPLPSSGTKSTEGGTKWNKCDREREHSRDASAKGSGTKSGRHSSGSGRSGERKNKTK 1075
Query: 675 YRRE 686
+++
Sbjct: 1076 PKQK 1079
>04_04_0463 - 25397837-25399693,25402136-25402405
Length = 708
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +1
Query: 67 IDRLEANGGTNIDAALGTAIDLIRNRSELFANSTSS 174
I+ L A+GGTNI AL A+ +I +RS + NS S
Sbjct: 341 INSLGASGGTNIADALKKAMKVIEDRS--YKNSVCS 374
>02_01_0030 -
183836-183903,183986-184453,184526-184604,184698-185183
Length = 366
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +3
Query: 513 PRPSSVRTTRGPRWWSPGRSITATRDLESTVEASAA 620
PRPS+ PR WS S R ST E +AA
Sbjct: 24 PRPSTCSVFYPPRCWSKRSSGNGVRAQASTTETTAA 59
>04_03_0760 + 19334338-19334690,19337321-19338008
Length = 346
Score = 27.9 bits (59), Expect = 8.6
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 402 ASDAALQ-LRDFYRQVSSPLLSHVKFVYAPDQVIESRLPRPSSVRTTRGPRWWSPGRSI 575
+S AAL D Y +V P H V AP Q P SS T GP +W+P ++
Sbjct: 284 SSAAALDAFLDAYAEVGPPRQQHRHGVQAPQQ------PESSS---TSGPAYWAPAHAV 333
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,348,564
Number of Sequences: 37544
Number of extensions: 379428
Number of successful extensions: 1270
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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