Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021809
(724 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53705| Best HMM Match : Cornifin (HMM E-Value=1.3) 31 0.95
SB_37528| Best HMM Match : Cornifin (HMM E-Value=0.97) 31 0.95
SB_71| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25) 29 3.8
SB_44910| Best HMM Match : NinF (HMM E-Value=5.6) 29 5.0
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_982| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_55405| Best HMM Match : Bromodomain (HMM E-Value=5.5e-16) 28 6.7
SB_31180| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_9845| Best HMM Match : NHL (HMM E-Value=3.3) 28 8.8
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_23915| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_53705| Best HMM Match : Cornifin (HMM E-Value=1.3)
Length = 308
Score = 31.1 bits (67), Expect = 0.95
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -3
Query: 128 SMAVPSAASMLVPPFASSL 72
SM VP+ ASMLVPP+AS L
Sbjct: 153 SMLVPTYASMLVPPYASML 171
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = -3
Query: 137 LIRSMAVPSAASMLVPPFASSL 72
L SM VP ASMLVPP+AS L
Sbjct: 46 LYASMLVPLYASMLVPPYASML 67
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -3
Query: 128 SMAVPSAASMLVPPFASSL 72
S+ VP ASMLVPP+ASSL
Sbjct: 201 SILVPPYASMLVPPYASSL 219
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -3
Query: 128 SMAVPSAASMLVPPFASSL 72
SM VP AS+LVPP+ASSL
Sbjct: 281 SMLVPPYASILVPPYASSL 299
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -3
Query: 137 LIRSMAVPSAASMLVPPFASSL 72
L S+ VP AS+LVPP+ASSL
Sbjct: 70 LYASILVPPYASILVPPYASSL 91
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = -3
Query: 167 VELAKSSDLFLIRSMAVPSAASMLVPPFASSL 72
V L S + L S+ VP ASMLVPP+AS L
Sbjct: 260 VPLYASMLVRLYASILVPPYASMLVPPYASIL 291
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3
Query: 128 SMAVPSAASMLVPPFASSL 72
SM VP AS+LVPP+AS+L
Sbjct: 129 SMLVPLYASILVPPYASTL 147
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -3
Query: 128 SMAVPSAASMLVPPFASSL 72
S+ VP AS LVPP+ASSL
Sbjct: 17 SILVPPYASTLVPPYASSL 35
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -3
Query: 128 SMAVPSAASMLVPPFASSL 72
SM VP AS+LVPP+AS L
Sbjct: 65 SMLVPLYASILVPPYASIL 83
>SB_37528| Best HMM Match : Cornifin (HMM E-Value=0.97)
Length = 443
Score = 31.1 bits (67), Expect = 0.95
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = -3
Query: 137 LIRSMAVPSAASMLVPPFASSL 72
L SM VP ASMLVPP+AS L
Sbjct: 118 LYASMLVPPYASMLVPPYASML 139
Score = 31.1 bits (67), Expect = 0.95
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = -3
Query: 137 LIRSMAVPSAASMLVPPFASSL 72
L SM VP ASMLVPP+AS L
Sbjct: 150 LYASMLVPPYASMLVPPYASML 171
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = -3
Query: 137 LIRSMAVPSAASMLVPPFASSL 72
L SM VP ASMLVPP+AS L
Sbjct: 110 LYASMLVPLYASMLVPPYASML 131
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = -3
Query: 137 LIRSMAVPSAASMLVPPFASSL 72
L SM VP ASMLVPP+AS L
Sbjct: 62 LYASMLVPLYASMLVPPYASIL 83
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -3
Query: 128 SMAVPSAASMLVPPFASSL 72
SM VP ASMLVPP+AS L
Sbjct: 89 SMLVPPYASMLVPPYASML 107
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -3
Query: 128 SMAVPSAASMLVPPFASSL 72
SM VP ASMLVPP+AS L
Sbjct: 129 SMLVPPYASMLVPPYASML 147
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -3
Query: 128 SMAVPSAASMLVPPFASSL 72
SM VP ASMLVPP+AS L
Sbjct: 161 SMLVPPYASMLVPPYASML 179
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -3
Query: 128 SMAVPSAASMLVPPFASSL 72
SM VP ASMLVPP+AS L
Sbjct: 169 SMLVPPYASMLVPPYASML 187
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -3
Query: 128 SMAVPSAASMLVPPFASSL 72
SM VP ASMLVPP+AS L
Sbjct: 177 SMLVPPYASMLVPPYASML 195
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -3
Query: 128 SMAVPSAASMLVPPFASSL 72
SM VP ASMLVPP+AS L
Sbjct: 145 SMLVPLYASMLVPPYASML 163
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -3
Query: 128 SMAVPSAASMLVPPFASSL 72
SM VP ASMLVPP+AS L
Sbjct: 25 SMLVPVYASMLVPPYASIL 43
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3
Query: 137 LIRSMAVPSAASMLVPPFASSL 72
L SM VP AS+LVPP+AS L
Sbjct: 70 LYASMLVPPYASILVPPYASML 91
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3
Query: 137 LIRSMAVPSAASMLVPPFASSL 72
L S+ VP ASMLVPP+AS L
Sbjct: 214 LYASILVPPYASMLVPPYASML 235
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3
Query: 137 LIRSMAVPSAASMLVPPFASSL 72
L SM VP AS+LVPP+AS L
Sbjct: 206 LYASMLVPLYASILVPPYASML 227
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3
Query: 137 LIRSMAVPSAASMLVPPFASSL 72
L S+ VP ASMLVPP+AS L
Sbjct: 374 LYASILVPLYASMLVPPYASML 395
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -3
Query: 128 SMAVPSAASMLVPPFASSL 72
SM VP AS+LVPP+AS+L
Sbjct: 417 SMLVPLYASILVPPYASTL 435
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -3
Query: 128 SMAVPSAASMLVPPFASSL 72
S+ VP ASMLVPP+AS L
Sbjct: 81 SILVPPYASMLVPPYASML 99
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3
Query: 137 LIRSMAVPSAASMLVPPFASSL 72
L SM VP AS+LVPP+AS L
Sbjct: 254 LYASMLVPLYASILVPPYASIL 275
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -3
Query: 128 SMAVPSAASMLVPPFASSL 72
SM VP AS+LVPP+AS L
Sbjct: 33 SMLVPPYASILVPPYASIL 51
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3
Query: 137 LIRSMAVPSAASMLVPPFASSL 72
L S+ VP AS+LVPP+AS L
Sbjct: 262 LYASILVPPYASILVPPYASML 283
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -3
Query: 137 LIRSMAVPSAASMLVPPFASSL 72
L SM VP AS LVPP+AS L
Sbjct: 334 LYASMLVPLYASTLVPPYASIL 355
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -3
Query: 128 SMAVPSAASMLVPPFASSL 72
SM VP AS+LVPP+AS L
Sbjct: 393 SMLVPLYASILVPPYASIL 411
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3
Query: 137 LIRSMAVPSAASMLVPPFASSL 72
L S+ VP AS+LVPP+AS L
Sbjct: 398 LYASILVPPYASILVPPYASML 419
>SB_71| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -3
Query: 128 SMAVPSAASMLVPPFASSL 72
SM VP ASMLVPP+AS L
Sbjct: 57 SMLVPPYASMLVPPYASML 75
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -3
Query: 137 LIRSMAVPSAASMLVPPFASSL 72
L SM VP AS+LVPP+AS+L
Sbjct: 238 LYASMLVPLYASILVPPYASTL 259
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3
Query: 137 LIRSMAVPSAASMLVPPFASSL 72
L S+ VP ASMLVPP+AS L
Sbjct: 118 LYASILVPLYASMLVPPYASML 139
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3
Query: 137 LIRSMAVPSAASMLVPPFASSL 72
L SM VP AS+LVPP+AS L
Sbjct: 262 LYASMLVPPYASILVPPYASIL 283
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3
Query: 137 LIRSMAVPSAASMLVPPFASSL 72
L SM VP AS+LVPP+AS L
Sbjct: 94 LYASMLVPLYASILVPPYASIL 115
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3
Query: 137 LIRSMAVPSAASMLVPPFASSL 72
L S+ VP ASMLVPP+AS L
Sbjct: 174 LYASILVPLYASMLVPPYASIL 195
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -3
Query: 128 SMAVPSAASMLVPPFASSL 72
S+ VP ASMLVPP+AS L
Sbjct: 193 SILVPLYASMLVPPYASML 211
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -3
Query: 128 SMAVPSAASMLVPPFASSL 72
S+ VP AS+LVPP+AS+L
Sbjct: 273 SILVPPYASILVPPYASTL 291
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +3
Query: 279 EKNYGSDEATIFSLAFGED--ADPKLLRKLSLRNNGFARHIYEASDAALQLRD 431
EKNY E + S+ FG+ + PK L+++ LR F + A + L D
Sbjct: 2866 EKNYAQIEKEMLSIVFGKSLISAPKRLQRMMLRLQKFDLQVNYKRGAEMYLAD 2918
>SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25)
Length = 662
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +3
Query: 330 EDADPKLLRKLSLRNNGFARHIYEAS-DAALQLRDFYRQVSSPLLSHVKFVYAPDQVIES 506
++ D +L++K+ N GF RH+ ++S D AL +Q+SS + + + Y + V S
Sbjct: 305 QNKDLRLMQKILQHNYGFTRHVLKSSTDMALLYSK--KQLSSRIQNLLSLKYKVNPVAHS 362
Query: 507 RL 512
L
Sbjct: 363 DL 364
>SB_44910| Best HMM Match : NinF (HMM E-Value=5.6)
Length = 113
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +1
Query: 280 KRITEVMKPRYFHLLSVRMRIPSSCASCRSATTVLRDTSTRPQTRRCSCATSTDRSPRLC 459
+R+++ K ++L +R + SS S TVL + RP C+ +TD RLC
Sbjct: 6 QRVSDKAKEMVEYVLELRNKGESSNDSIDVLLTVLDGAADRP----CTLEAATDDIKRLC 61
Query: 460 CHMSNLSTH 486
+ S H
Sbjct: 62 LKVVGSSAH 70
>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2956
Score = 28.7 bits (61), Expect = 5.0
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Frame = +1
Query: 190 LSLEPIIIFLTDGDP-TVGEMNPKQ*LKMSLKRITEVMKP---RYFHLLSVRMRIPSSCA 357
++L +I F++D + +++ + +++++ E+ KP RY++ + S C+
Sbjct: 1814 ITLSGLITFVSDWKRGNIYKLSIETNVELNITVAEEIKKPTAIRYYNQSRYNF-VESQCS 1872
Query: 358 SCRSATTVLRDTSTRPQTRRCSCATSTDRSP--RLCCH 465
+ L RP +R C+CAT SP + C H
Sbjct: 1873 QNNGGCSDL--CLLRPHSRTCACATGVPLSPDEKTCDH 1908
>SB_982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 28.3 bits (60), Expect = 6.7
Identities = 26/106 (24%), Positives = 38/106 (35%)
Frame = +3
Query: 369 RNNGFARHIYEASDAALQLRDFYRQVSSPLLSHVKFVYAPDQVIESRLPRPSSVRTTRGP 548
R N + I E S + + L S + V D VIE P V R
Sbjct: 232 RKNLISERIEEVSSNEPSSKSQSQSSDPSLHSSIATVSGVDCVIEEPSSPPRLVPRQRSK 291
Query: 549 RWWSPGRSITATRDLESTVEASAAMRTSTS*GKKSQRKSKFRYRRE 686
SP RS + S+ +S +T +++K K +RE
Sbjct: 292 EPSSPARSSVESNSSSSSTSSSEKGQTEIRVHDSAEQKKKLERQRE 337
>SB_55405| Best HMM Match : Bromodomain (HMM E-Value=5.5e-16)
Length = 657
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 330 EDADPKLLRKLSLRNNGFARHIYEAS-DAALQLRDFYRQVSSPLLSHVKFVYAPDQVIES 506
++ D +L++K+ N GF RH+ ++S D AL +Q+SS + + + Y + V S
Sbjct: 142 QNKDLRLMQKILQHNYGFTRHVLKSSTDMALLYSK--KQLSSRIQNLLSLKYKVNPVAHS 199
>SB_31180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 396 YEASDAALQLRDFYRQVSSPLLSHVKFVYAPDQVIESRLPRPSSVRTTRGPR-WWSPGRS 572
+ + + ++DFY ++ L SHV F P ++++ L T+ R + P +
Sbjct: 107 FTVEEMSEMVQDFYVAIAERLQSHVLFKGQPQEILDRTLDNIEKYIMTKLYRVVFCPAST 166
Query: 573 ITATRDLE 596
T+DLE
Sbjct: 167 DDETKDLE 174
>SB_9845| Best HMM Match : NHL (HMM E-Value=3.3)
Length = 633
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +1
Query: 280 KRITEVMKPRYFHLLSVRMRIPSSCASCRSATTVLRDTSTRPQTRRCSCATSTDRSPRLC 459
+R++ K ++L +R + SS S TVL + RP C+ +TD RLC
Sbjct: 6 QRVSHKAKEMVEYVLELRNKGESSNDSIDVLLTVLDGVADRP----CTLEAATDDIKRLC 61
Query: 460 CHMSNLSTH 486
+ S H
Sbjct: 62 LKVVGSSAH 70
>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2142
Score = 27.9 bits (59), Expect = 8.8
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Frame = +3
Query: 330 EDADPKLLRKLSLRNNGFARHIYEASDAALQLRDFYRQVSSPLLSHVKFVYAPDQVI--E 503
+DA+ ++LS R++ RH E SDA ++ + S PL + + ++ + E
Sbjct: 586 DDAEKSGTKRLSGRHSTSKRHSREPSDARELIQARQSKPSEPLKIKSEVDKSKEEEVKEE 645
Query: 504 SRLPRPSSVRTTRGPRWWSPGRSITATRDLESTVEASAAMRTSTS*GKKSQRKSKFR 674
SR + R P W RS R +A + + G+ S KS+ R
Sbjct: 646 SRNRTERGSKVKREPEWLRDQRSPGEKRFKIPKKPRNARVGFKGARGRGSYHKSQER 702
>SB_23915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -1
Query: 715 PIDVQGVNHFSRRYRNFDFLCDF-FP-QEVLVLIAAEASTVDSRSRVAVIDLPGDHHLGP 542
P+D+ + ++R+ +FLC+ +P Q +L+ ++ S R +I P H GP
Sbjct: 76 PLDL--IERATKRFLFGEFLCNIIYPLQTILMSVSVMTLLGMSMERYRLIVTPFRQHFGP 133
Query: 541 RVV 533
R V
Sbjct: 134 RTV 136
>SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2061
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +1
Query: 280 KRITEVMKPRYFHLLSVRMRIPSSCASCRSATTVLRDTSTRPQTRRCSCATSTDRSPRLC 459
+R+++ K ++L +R + SS S TVL + RP C+ +TD RLC
Sbjct: 405 QRVSDKAKEIVEYVLELRNKGESSNDSIDVLLTVLDGVADRP----CTLEAATDDIKRLC 460
Query: 460 CHMSNLSTH 486
+ S H
Sbjct: 461 LKVVGSSAH 469
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,989,192
Number of Sequences: 59808
Number of extensions: 424378
Number of successful extensions: 3460
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3456
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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