Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021809
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo...    30   1.9  
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo...    30   1.9  
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo...    30   1.9  
AF003135-9|AAK18985.3| 1146|Caenorhabditis elegans Guanylyl cycl...    30   1.9  
AC024794-1|AAK68497.1|  994|Caenorhabditis elegans Hypothetical ...    30   1.9  
L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated p...    29   2.5  
AL117203-12|CAB60423.1|  487|Caenorhabditis elegans Hypothetical...    29   2.5  
AF000261-11|AAB52931.1|  268|Caenorhabditis elegans Hypothetical...    29   3.4  
U97015-5|AAB52344.2|  362|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical pr...    29   4.4  
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    28   7.8  
AL110485-20|CAB60368.2|  600|Caenorhabditis elegans Hypothetical...    28   7.8  
AL110485-6|CAB60353.1|  193|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
            metabolism enzyme-5 protein.
          Length = 2238

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 16   KPASKATPENIARAKIIIDRLEAN 87
            +P  + T ENI +AK+++D+LE N
Sbjct: 1907 QPFGRFTKENIEKAKLVLDKLEKN 1930


>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
            metabolism enzymeprotein 5, isoform a protein.
          Length = 2276

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 16   KPASKATPENIARAKIIIDRLEAN 87
            +P  + T ENI +AK+++D+LE N
Sbjct: 1945 QPFGRFTKENIEKAKLVLDKLEKN 1968


>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
            metabolism enzymeprotein 5, isoform b protein.
          Length = 2238

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 16   KPASKATPENIARAKIIIDRLEAN 87
            +P  + T ENI +AK+++D+LE N
Sbjct: 1907 QPFGRFTKENIEKAKLVLDKLEKN 1930


>AF003135-9|AAK18985.3| 1146|Caenorhabditis elegans Guanylyl cyclase
           protein 17 protein.
          Length = 1146

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/83 (25%), Positives = 38/83 (45%)
 Frame = +3

Query: 264 IKNVAEKNYGSDEATIFSLAFGEDADPKLLRKLSLRNNGFARHIYEASDAALQLRDFYRQ 443
           +K +++K+    EA+  S A G     KL  +       F  +IY+    A    DF  Q
Sbjct: 482 LKPISKKS--KSEASQRSFASGPSTSTKLTVESRTETTRFIFYIYQNEVVAANKHDFRPQ 539

Query: 444 VSSPLLSHVKFVYAPDQVIESRL 512
           ++    S ++ V+  D+++ S L
Sbjct: 540 LTDVERSELRQVWPRDEMVTSHL 562


>AC024794-1|AAK68497.1|  994|Caenorhabditis elegans Hypothetical
           protein Y48G1BM.5 protein.
          Length = 994

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 361 CRSATTVLRDTSTRPQTRRCSCATSTDRS 447
           C  ATT+ R TST  +T R    T+T RS
Sbjct: 588 CSHATTIRRATSTTTRTSRTGVPTTTSRS 616


>L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated
           protein 36 protein.
          Length = 1249

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +3

Query: 288 YGSDEAT-IFSLAFGEDA-DPKLLRKLSLRNNGFARHIYEASDAALQLRDFYRQVSSPLL 461
           Y +D+   +F+   G++A D   +R+++  N G+  H+   +D   ++  + R++S  + 
Sbjct: 425 YNADKKVRVFTFLVGDEAIDFNEVREMACNNRGYMVHVANMADVDEKIHHYIRRMSRVVG 484

Query: 462 SHVK 473
            H K
Sbjct: 485 RHYK 488


>AL117203-12|CAB60423.1|  487|Caenorhabditis elegans Hypothetical
           protein Y48C3A.20 protein.
          Length = 487

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 461 VTCQICLRTGSGDREQVTK 517
           V C++C+R  SGD E+VTK
Sbjct: 9   VLCEVCVRQISGDAEEVTK 27


>AF000261-11|AAB52931.1|  268|Caenorhabditis elegans Hypothetical
           protein F19B10.1 protein.
          Length = 268

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 4   KPTLKPASKATPENIARAKIIIDRLEANGGT 96
           KP ++P+   +PE +A  K + + ++A GG+
Sbjct: 72  KPAVEPSPSCSPETVAVQKFVTEFMQAAGGS 102


>U97015-5|AAB52344.2|  362|Caenorhabditis elegans Hypothetical
           protein F48C1.2 protein.
          Length = 362

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +1

Query: 52  RAKIIIDRLEANGGTNIDAALGTAIDLIRNRSELFANSTSSNKDEILSLEPIIIFLTDGD 231
           ++K II ++ AN     DAA+GT   L     E+    +S  K+ I+S   + I +   +
Sbjct: 211 QSKDIIWKI-ANKWIETDAAIGTRFQLTSMSKEIITQFSSHFKNRIISASDVEILIRTDN 269

Query: 232 P 234
           P
Sbjct: 270 P 270


>U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical
           protein R04E5.2 protein.
          Length = 762

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 136 RNRSELFANSTSSNKDEILSLEPIIIFLTDGDPTVGEMNPKQ*LKMSLKRITEVM 300
           ++ +ELF +   S +  +  LE    +L +  P  G MNPK    +  + I EV+
Sbjct: 534 KSAAELFCSEKKSERLSLHMLEMTEKWLLEKTPLFGNMNPKAFENLIQRNIREVL 588


>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
            protein 3 protein.
          Length = 3343

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +1

Query: 304  PRYFHLLSVRMR-IPSSCASCRSATTVLRDTSTRPQTRRCSCATSTDRSPRLCCHMSNL 477
            P+ F LL V     PSS +SC S   ++   ST P    CS     +    L  H +NL
Sbjct: 1004 PKSFKLLHVTTSPSPSSESSCISPAHLISPPSTVPLPSNCSNVKLQNLKTSLQIHENNL 1062


>AL110485-20|CAB60368.2|  600|Caenorhabditis elegans Hypothetical
           protein Y46G5A.25 protein.
          Length = 600

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 379 VLRDTSTRPQTRRCSCATSTDRSPRLCCHMS 471
           +LRD + R   +R SC T    S  LC  MS
Sbjct: 84  ILRDQAKRAAMQRGSCETPVTNSANLCLGMS 114


>AL110485-6|CAB60353.1|  193|Caenorhabditis elegans Hypothetical
           protein Y46G5A.8 protein.
          Length = 193

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +1

Query: 46  IARAKIIIDRL-EANGGTNIDAALGTAIDLIRNRSELFANSTSSNKDEILSLEPIIIFL 219
           I  ++I  DR  E   G +ID  LGT  DL+ N      N     +DE + +  I+  L
Sbjct: 72  ILGSRIGFDRCTELYKGRDIDRLLGTTSDLLDNLHVEHVNLDIRRRDEEVEIHKIVTML 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,462,690
Number of Sequences: 27780
Number of extensions: 318347
Number of successful extensions: 1053
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)