Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021809
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.1  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 655 KENQSSGTVEKSDLPLERLW 714
           K+N +SGT+ +S+   E  W
Sbjct: 47  KKNSNSGTINESEFNDENYW 66


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +1

Query: 286 ITEVMKPRYFHLLSVRMRIPSSCASCRSATTVLRDTSTRPQTRRCSCATSTD 441
           I E +  ++  +   R    S C    S   V+R+ +   + RR SC  ST+
Sbjct: 334 IRESLDTQFLQVCRSRRHSDSCCLCLDSMNAVIRNFN-ESENRRNSCLGSTE 384


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 352 KSLGSASSPKASENIVASSLP 290
           K + S   PK+SE+   SS+P
Sbjct: 348 KQMASPEPPKSSESSTGSSIP 368


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = -2

Query: 639 RKCSFSSPQKLRRWTRGHASRLSTCPATTTSDPA*YVRNLVLVTCSRSPDPVRRQI*HVT 460
           RK   S    L++  +   S  +T  +  TS  +  VRN +  TCS +  P ++++    
Sbjct: 305 RKSHESQCPMLQKLEKPVLSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSPHQKKLRFHL 364

Query: 459 AEARR 445
           A+ R+
Sbjct: 365 AKERK 369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,121
Number of Sequences: 438
Number of extensions: 4023
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)