Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021809
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g29290.1 68416.m03677 pentatricopeptide (PPR) repeat-containi...    29   4.1  
At1g72640.1 68414.m08399 expressed protein                             29   4.1  
At2g38160.1 68415.m04684 expressed protein                             28   7.2  
At2g38970.1 68415.m04789 zinc finger (C3HC4-type RING finger) fa...    27   9.5  

>At3g29290.1 68416.m03677 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 540

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +1

Query: 316 HLLSVRMRIPSSCASCRSATTVLRDTSTRPQTRRCSCATSTDRSPRLCCHMSNL-STHRI 492
           H  S+ ++  +    C SA  + R+    P+ R C      + +  LC  ++N+  T RI
Sbjct: 177 HTYSLMLKAVAEVKGCESALRMFRELEREPKRRSCFDVVLYNTAISLCGRINNVYETERI 236


>At1g72640.1 68414.m08399 expressed protein
          Length = 330

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 154 FANSTSSNKDEILSLEPIIIFLTDGDPTVGEM 249
           F  + +  K++ L  E  ++F+TDGD  +G+M
Sbjct: 105 FETNEAEEKEDDLDGEKDVVFVTDGDSDLGQM 136


>At2g38160.1 68415.m04684 expressed protein
          Length = 299

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = +1

Query: 1   VKPTLKPASKATPENIARAKIIIDRLEANGGTNIDAALGTAIDLIRNRSELFANSTSSNK 180
           VKP++KP+ +ATP   +RA +   RL  +   +   ++ T+I     R+  F  S+S  K
Sbjct: 139 VKPSIKPSRQATP--TSRATLPSTRLTNSAQKSNSESITTSIK-SNTRASAFPRSSSVGK 195


>At2g38970.1 68415.m04789 zinc finger (C3HC4-type RING finger)
           family protein very low similarity to SP|P97280
           Inter-alpha-trypsin inhibitor heavy chain H3 precursor
           {Mesocricetus auratus}; contains Pfam profiles PF00097:
           Zinc finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 692

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 13  LKPASKATPENIARAKIIIDRLEANGGTNIDAALGTAIDLIRNRSE 150
           L P +K +     RA   ++ + ANGGTNI   L   + ++ +R +
Sbjct: 301 LFPLTKMSDAGRQRALQAVNSVVANGGTNIAEGLRKGVKVMEDRRD 346


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,657,902
Number of Sequences: 28952
Number of extensions: 298832
Number of successful extensions: 1148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)