Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021808
         (763 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    23   2.0  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   2.7  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   2.7  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   6.1  

>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +2

Query: 401 CFTQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSLVLVIN*NG 535
           C  +  V+KF +MW     S   + + +V +++ F    + N  G
Sbjct: 402 CGRRADVLKFWFMWKAKGTSGLEKHVDKVFENARFFTDCIKNREG 446


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 189 KIGLYERIMALARYN 233
           K+GLYERI  L + N
Sbjct: 144 KVGLYERIQKLKKAN 158


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = +2

Query: 326 GAGGMAV--SRVPSPLHDGNTPVAENWCFTQV 415
           G  G AV  SR P P HDG   + E +   +V
Sbjct: 203 GQLGAAVDESRTPRPKHDGRGRIVERFTSDRV 234


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 306 DCGEGAPPPDPPTHSFNQRS 247
           D   G+  P+ P H +NQ++
Sbjct: 96  DLFRGSSTPESPEHYYNQKT 115


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,688
Number of Sequences: 336
Number of extensions: 3208
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)