Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021808
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.2  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    27   2.9  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    27   3.9  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    27   3.9  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    27   3.9  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   5.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.9  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   8.9  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    25   8.9  

>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 417 LTCVKHQFSATGVFPSCNGLGTRLTAI 337
           L+CV  +F  TGV P  + +G RLT I
Sbjct: 187 LSCVPVEFQLTGVKPENSKVGWRLTKI 213


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 381 VFPSCNGLGTRLTAIPPAPFEETRADCGEGAPPPDPP 271
           VFPS N  G R + +P    + T  D GE   P  PP
Sbjct: 459 VFPSINSFGRRHSNLP----QTTHVDTGEQNTPFTPP 491


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 455 FSFCREEMGEVLKSSTFSLVLVIN*NGVFASIQKDS 562
           F F   E+   +++    LV+VIN NGV+  +  D+
Sbjct: 450 FGFSAMELETAIRNQLDLLVIVINNNGVYHGLDTDA 485


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 372 SCNGLGTRLTAIPPAPFEETRADCGEGAPPPDPP 271
           +C G G RL  IPP+   +T  D   G     PP
Sbjct: 259 ACKGTGQRLHFIPPSFHMQTTCDSCGGTGTTIPP 292


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -3

Query: 746 G*TFWNPQSFPCTNLYARCDSIALVSSLLAFNIENL 639
           G T++N  S PC++   +C  ++  S+ LA N+E++
Sbjct: 187 GATYFN--SAPCSSFMIKCGHVSNTSTELAENVESI 220


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 177  VTFWKIGLYERIMALARY 230
            +TFWK+ LY+  + L RY
Sbjct: 978  LTFWKLSLYDVFVPLERY 995


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = -2

Query: 345 TAIPPAPFEETRADCGEGAPPPDPPTHSFNQRSARFAD 232
           T IP  P      DC     P D P  +  Q S R+ D
Sbjct: 225 TVIPSNPNSVFLVDCTHSQCPTDLPNIATTQHSLRYLD 262


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 677 LVSSLLAFNIENLNFARTSDLLHETNNKYNDK 582
           ++ S+  F+IE     R +D LHE+N   ND+
Sbjct: 203 VIESICKFSIETF---RLTDRLHESNRHINDQ 231


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 516 STSEKVDDFNTSPISSLQKL 457
           S  EK+DD N+S +S LQ+L
Sbjct: 69  SMGEKMDDLNSSIVSLLQEL 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,510
Number of Sequences: 5004
Number of extensions: 53203
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)