Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021808
         (763 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39453| Best HMM Match : BTB (HMM E-Value=3.1e-36)                  157   1e-38
SB_17635| Best HMM Match : CUB (HMM E-Value=0)                         30   2.4  
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            29   4.1  
SB_40619| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_41606| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_28186| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_39453| Best HMM Match : BTB (HMM E-Value=3.1e-36)
          Length = 398

 Score =  157 bits (380), Expect = 1e-38
 Identities = 74/95 (77%), Positives = 81/95 (85%)
 Frame = +1

Query: 454 F*FL*RRNG*SVKIIDFLTGASDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNKSEVRA 633
           F F     G ++K   F  GA+DK+KWCLRVNP+GLDEESKDYLSLYLLL+ CNKSEVRA
Sbjct: 64  FSFCREEMGETLKSSTFSAGANDKMKWCLRVNPRGLDEESKDYLSLYLLLLLCNKSEVRA 123

Query: 634 KFKFSILNAKREETKAMESQRAYRFVQGKDWGFQK 738
           KFKFSILNA REETKAMESQRAYRFVQGKDWGF+K
Sbjct: 124 KFKFSILNANREETKAMESQRAYRFVQGKDWGFKK 158



 Score = 95.5 bits (227), Expect = 4e-20
 Identities = 39/44 (88%), Positives = 43/44 (97%)
 Frame = +2

Query: 377 NTPVAENWCFTQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFS 508
           +TPVAENWC+TQ+KV+KFSYMWTINNFSFCREEMGE LKSSTFS
Sbjct: 38  STPVAENWCYTQIKVIKFSYMWTINNFSFCREEMGETLKSSTFS 81


>SB_17635| Best HMM Match : CUB (HMM E-Value=0)
          Length = 630

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 342 AIPPAPFEETRADCGEGAPPPDPPTHSFNQRS 247
           A PP P++ + + C   +PP  PP +S ++ S
Sbjct: 524 ASPPPPYQVSGSACSTESPPLHPPPYSHHEAS 555


>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = -2

Query: 375 PSCNGLGTRLTAIPPAPFEETRADCGEGAPPPDPP 271
           P   G     T   PAP + T AD   G P P PP
Sbjct: 288 PEDKGTNKPTTEEKPAPAKSTWADLFRGVPKPTPP 322


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 381 VFPSCNGLGTRLTAIPPAPF-EETRADCGEGAPPPDPPTHSF 259
           VF S +G+ T + A PP+ F   +       APPP PP   F
Sbjct: 367 VFASSSGVPTPVKAPPPSVFASSSGVPTPVAAPPPAPPPSVF 408


>SB_40619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -2

Query: 363 GLGTRLTAIPPA--PFEETRADCGEGAPPPDPPTHSFNQRSARFADYTWLRPLFVRIIQF 190
           G+  RL+   P   PF      C    PPP+ P  +         D+TW+R L  R+++ 
Sbjct: 12  GMTKRLSTCTPVALPF----ISCTPVHPPPNSPVLTLTPLKKSLVDFTWIRTL-ARLLE- 65

Query: 189 SKMSP 175
            K SP
Sbjct: 66  -KRSP 69


>SB_41606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1144

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +2

Query: 326  GAGGMAVSRVPSPLHDGNTPVAENWCFTQV--KVVKFSYMWTINNFSFCREEMGEVLKSS 499
            G  G+ + RVP PL D +   A+NW   Q+  + +  ++M       F R+       + 
Sbjct: 915  GLIGLFLPRVPLPLTDTDQFDADNWLAVQLMSRPITLNWMVLCQIAQFVRDHTAHWYLAP 974

Query: 500  TFSLVLVI 523
              SL+ VI
Sbjct: 975  PSSLIRVI 982


>SB_28186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 22/71 (30%), Positives = 31/71 (43%)
 Frame = -2

Query: 327 PFEETRADCGEGAPPPDPPTHSFNQRSARFADYTWLRPLFVRIIQFSKMSPLLSTHMITS 148
           P   T   C    PPP+    +         D+TW+R L  R+++  K SP    H   +
Sbjct: 22  PVALTFISCTPVHPPPNSTVLTLTPLKKSLVDFTWIRTL-ARLLE--KQSPY---HGAIA 75

Query: 147 H*FKKIK*KSL 115
           H F+ IK K L
Sbjct: 76  H-FRDIKEKLL 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,403,063
Number of Sequences: 59808
Number of extensions: 400715
Number of successful extensions: 1243
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)