Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021808
         (763 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   4.5  
AJ439060-13|CAD27764.1|  319|Anopheles gambiae putative transcri...    24   5.9  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    24   5.9  

>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
 Frame = -2

Query: 402 HQFSATG---VFPSCNGLGTRLTAIPP 331
           H FSA     +  SCN LG  +  +PP
Sbjct: 363 HHFSAASQRFMLRSCNSLGDHIPPLPP 389


>AJ439060-13|CAD27764.1|  319|Anopheles gambiae putative
           transcription factor protein.
          Length = 319

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 12/63 (19%), Positives = 34/63 (53%)
 Frame = +2

Query: 554 KDSMKRAKTIYRYTYY*SRVINQKCGQSLNFQY*MLKEKKLKQWNRNGRTDSCKEKTGDS 733
           ++ +++ +  +  T+Y   ++ +K    ++     LKE++++ W +N R    K+K  + 
Sbjct: 196 EEQLEQLEATFDKTHYPDVLLREKLAIKVD-----LKEERVEVWFKNRRAKWRKQKREEQ 250

Query: 734 KKF 742
           ++F
Sbjct: 251 EQF 253


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = -2

Query: 411 CVKHQFSATGVFPSCNGLGTRLTAIPPAPFEETRAD 304
           CV+ Q   TG     N   T  T   P P E+   D
Sbjct: 687 CVQCQQYKTGPLAEANECATNCTLFVPIPVEKVTID 722


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 729,883
Number of Sequences: 2352
Number of extensions: 13176
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79002570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)