Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021808
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30662-10|CAI58651.1|  409|Caenorhabditis elegans Hypothetical p...   158   3e-39
Z30662-9|CAA83138.2|  451|Caenorhabditis elegans Hypothetical pr...   158   3e-39
U00032-10|AAA50637.1|  418|Caenorhabditis elegans Hypothetical p...    36   0.024
Z79759-4|CAB02139.2|  395|Caenorhabditis elegans Hypothetical pr...    32   0.39 
U67737-1|AAC63596.1|  395|Caenorhabditis elegans MEL-26 protein.       32   0.39 
U13072-5|AAK31400.1|  390|Caenorhabditis elegans Hypothetical pr...    32   0.39 
U13072-4|AAL00851.1|  397|Caenorhabditis elegans Hypothetical pr...    32   0.39 
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    26   1.8  
U58748-9|AAB52969.3|  542|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U58748-8|AAM97986.1|  497|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U58748-7|AAM97987.1|  399|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z81586-9|CAB04699.2|  676|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AC024817-43|AAK93865.2|  151|Caenorhabditis elegans Ubiquitin co...    28   6.3  

>Z30662-10|CAI58651.1|  409|Caenorhabditis elegans Hypothetical
           protein T16H12.5b protein.
          Length = 409

 Score =  158 bits (384), Expect = 3e-39
 Identities = 75/95 (78%), Positives = 80/95 (84%)
 Frame = +1

Query: 454 F*FL*RRNG*SVKIIDFLTGASDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNKSEVRA 633
           F F     G  +K   F  G +DKLKWCLR+NPKGLDEES+DYLSLYLLLV CNKSEVRA
Sbjct: 63  FSFCREEMGEVLKSSTFSAGCNDKLKWCLRINPKGLDEESRDYLSLYLLLVQCNKSEVRA 122

Query: 634 KFKFSILNAKREETKAMESQRAYRFVQGKDWGFQK 738
           KFKFSILNAKREETKAMESQRAYRFVQGKDWGF+K
Sbjct: 123 KFKFSILNAKREETKAMESQRAYRFVQGKDWGFKK 157



 Score =  101 bits (241), Expect = 7e-22
 Identities = 48/66 (72%), Positives = 52/66 (78%), Gaps = 2/66 (3%)
 Frame = +2

Query: 317 SSNGAGGMAVSRVPSPLHDGNT--PVAENWCFTQVKVVKFSYMWTINNFSFCREEMGEVL 490
           S N A G ++S  PS    G+   PVAENWC TQVKVVKF+YMWTINNFSFCREEMGEVL
Sbjct: 15  SGNSAHGRSISPSPSSASHGDPLLPVAENWCHTQVKVVKFNYMWTINNFSFCREEMGEVL 74

Query: 491 KSSTFS 508
           KSSTFS
Sbjct: 75  KSSTFS 80


>Z30662-9|CAA83138.2|  451|Caenorhabditis elegans Hypothetical
           protein T16H12.5a protein.
          Length = 451

 Score =  158 bits (384), Expect = 3e-39
 Identities = 75/95 (78%), Positives = 80/95 (84%)
 Frame = +1

Query: 454 F*FL*RRNG*SVKIIDFLTGASDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNKSEVRA 633
           F F     G  +K   F  G +DKLKWCLR+NPKGLDEES+DYLSLYLLLV CNKSEVRA
Sbjct: 105 FSFCREEMGEVLKSSTFSAGCNDKLKWCLRINPKGLDEESRDYLSLYLLLVQCNKSEVRA 164

Query: 634 KFKFSILNAKREETKAMESQRAYRFVQGKDWGFQK 738
           KFKFSILNAKREETKAMESQRAYRFVQGKDWGF+K
Sbjct: 165 KFKFSILNAKREETKAMESQRAYRFVQGKDWGFKK 199



 Score =  101 bits (241), Expect = 7e-22
 Identities = 48/66 (72%), Positives = 52/66 (78%), Gaps = 2/66 (3%)
 Frame = +2

Query: 317 SSNGAGGMAVSRVPSPLHDGNT--PVAENWCFTQVKVVKFSYMWTINNFSFCREEMGEVL 490
           S N A G ++S  PS    G+   PVAENWC TQVKVVKF+YMWTINNFSFCREEMGEVL
Sbjct: 57  SGNSAHGRSISPSPSSASHGDPLLPVAENWCHTQVKVVKFNYMWTINNFSFCREEMGEVL 116

Query: 491 KSSTFS 508
           KSSTFS
Sbjct: 117 KSSTFS 122


>U00032-10|AAA50637.1|  418|Caenorhabditis elegans Hypothetical
           protein F37A4.9 protein.
          Length = 418

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +1

Query: 529 KWCLRVNPKGLDEESKDYLSLYLLLVSCNKSEVRAKFKFSILNA 660
           ++ +++ P G DEE+  YLSL+LL+  C    +R +  F++  A
Sbjct: 79  EFVMKLFPNGKDEETAGYLSLFLLINKCPNPRLRFRVSFTVETA 122


>Z79759-4|CAB02139.2|  395|Caenorhabditis elegans Hypothetical
           protein ZK858.4 protein.
          Length = 395

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 407 TQVKVVKFSYMWTINNFSFCREE 475
           T++KV K  + WT+ NFS C +E
Sbjct: 35  TEIKVEKVQHTWTVKNFSHCYQE 57



 Score = 31.1 bits (67), Expect = 0.89
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +1

Query: 502 FLTGASDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNK---SEVRAKFKFSILNAKREE 672
           +L    ++L W +++ PKG  E +KD++ L L  V  N     ++  K +F +  A+ ++
Sbjct: 64  YLQRGDEQLTWSIKIYPKGNGENNKDFVFLCLNRVINNNVKAGKIGFKSQFKLRTAENKD 123


>U67737-1|AAC63596.1|  395|Caenorhabditis elegans MEL-26 protein.
          Length = 395

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 407 TQVKVVKFSYMWTINNFSFCREE 475
           T++KV K  + WT+ NFS C +E
Sbjct: 35  TEIKVEKVQHTWTVKNFSHCYQE 57



 Score = 31.1 bits (67), Expect = 0.89
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +1

Query: 502 FLTGASDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNK---SEVRAKFKFSILNAKREE 672
           +L    ++L W +++ PKG  E +KD++ L L  V  N     ++  K +F +  A+ ++
Sbjct: 64  YLQRGDEQLTWSIKIYPKGNGENNKDFVFLCLNRVINNNVKAGKIGFKSQFKLRTAENKD 123


>U13072-5|AAK31400.1|  390|Caenorhabditis elegans Hypothetical
           protein C07D10.2a protein.
          Length = 390

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +1

Query: 538 LRVNPKGLDEESKDYLSLYLLLVSCNKSEV---RAKFKFSILNAKREET 675
           +R++P+G  E +KD+            +     RAKFKF++ N + EET
Sbjct: 75  IRLHPQGNKESNKDFTFFQCFTNQATTTTTPTFRAKFKFTVFNQRTEET 123


>U13072-4|AAL00851.1|  397|Caenorhabditis elegans Hypothetical
           protein C07D10.2b protein.
          Length = 397

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +1

Query: 538 LRVNPKGLDEESKDYLSLYLLLVSCNKSEV---RAKFKFSILNAKREET 675
           +R++P+G  E +KD+            +     RAKFKF++ N + EET
Sbjct: 82  IRLHPQGNKESNKDFTFFQCFTNQATTTTTPTFRAKFKFTVFNQRTEET 130


>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
           protein F15B9.4 protein.
          Length = 1140

 Score = 26.2 bits (55), Expect(2) = 1.8
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = -2

Query: 375 PSCNGLGTRLTAIPPAPFEETRADCGEGAPPPDPP 271
           P   G+    T  PP P     A    GAP P PP
Sbjct: 507 PPLLGIAPMSTNAPPPPPMPGMAPLSTGAPTPPPP 541



 Score = 22.2 bits (45), Expect(2) = 1.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 288 PPPDPPTHSFN 256
           PPP PP+  FN
Sbjct: 580 PPPPPPSFMFN 590


>U58748-9|AAB52969.3|  542|Caenorhabditis elegans Hypothetical
           protein ZK180.5a protein.
          Length = 542

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -2

Query: 369 CNGLGTRLTAIPPAPFEETRADCGEGAPPPDPPTHSF 259
           C G      A P A +   R   G GAPPP PP  +F
Sbjct: 40  CGGASAAAYAAPAAGYP--RPPIGYGAPPPPPPPPAF 74


>U58748-8|AAM97986.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK180.5b protein.
          Length = 497

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -2

Query: 369 CNGLGTRLTAIPPAPFEETRADCGEGAPPPDPPTHSF 259
           C G      A P A +   R   G GAPPP PP  +F
Sbjct: 40  CGGASAAAYAAPAAGYP--RPPIGYGAPPPPPPPPAF 74


>U58748-7|AAM97987.1|  399|Caenorhabditis elegans Hypothetical
           protein ZK180.5c protein.
          Length = 399

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -2

Query: 369 CNGLGTRLTAIPPAPFEETRADCGEGAPPPDPPTHSF 259
           C G      A P A +   R   G GAPPP PP  +F
Sbjct: 40  CGGASAAAYAAPAAGYP--RPPIGYGAPPPPPPPPAF 74


>Z81586-9|CAB04699.2|  676|Caenorhabditis elegans Hypothetical
           protein T05F1.11 protein.
          Length = 676

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 319 FERRWRDGGEPRAQPVARRKHARRRK 396
           +ERRWR   E R + + R+K   R+K
Sbjct: 421 YERRWRIEEEERLEEIRRKKEEERKK 446


>AC024817-43|AAK93865.2|  151|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein13 protein.
          Length = 151

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 341 AVSRVPSPLHDGNTPVAENWCFTQVKVVKFSYMWTIN 451
           A+   P+P     T VAE W   + + +K +  WT+N
Sbjct: 111 ALLSAPNPEDPLATDVAEQWKTNEAEAIKTAKQWTMN 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,033,230
Number of Sequences: 27780
Number of extensions: 308399
Number of successful extensions: 1138
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)