Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021808
(763 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g28220.1 68416.m03525 meprin and TRAF homology domain-contain... 41 8e-04
At3g17380.1 68416.m02221 meprin and TRAF homology domain-contain... 36 0.022
At3g46190.1 68416.m05000 meprin and TRAF homology domain-contain... 31 0.63
At3g43700.1 68416.m04664 speckle-type POZ protein-related contai... 30 1.5
At1g31390.1 68414.m03843 meprin and TRAF homology domain-contain... 30 1.5
At3g58340.1 68416.m06503 meprin and TRAF homology domain-contain... 30 1.9
At3g58270.1 68416.m06496 meprin and TRAF homology domain-contain... 30 1.9
At3g58260.1 68416.m06495 meprin and TRAF homology domain-contain... 30 1.9
At1g58270.1 68414.m06628 meprin and TRAF homology domain-contain... 30 1.9
At2g01790.1 68415.m00109 meprin and TRAF homology domain-contain... 29 2.6
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 29 3.4
At4g17280.1 68417.m02597 auxin-responsive family protein similar... 29 3.4
At3g03740.1 68416.m00379 speckle-type POZ protein-related contai... 29 3.4
At4g00780.1 68417.m00108 meprin and TRAF homology domain-contain... 29 4.5
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 29 4.5
At2g39760.1 68415.m04882 speckle-type POZ protein-related contai... 28 5.9
At3g22080.1 68416.m02786 meprin and TRAF homology domain-contain... 28 7.8
At1g45688.1 68414.m05202 expressed protein 28 7.8
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 28 7.8
At1g13220.1 68414.m01533 nuclear matrix constituent protein-rela... 28 7.8
>At3g28220.1 68416.m03525 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 370
Score = 41.1 bits (92), Expect = 8e-04
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 532 WCLRVNPKGLDEESKDYLSLYLLLVSCNK-SEVRAKFKFSILNAKREETKAMESQRAYRF 708
W L+V P G E + LSLY++ V ++ K K I+N + ++K ME +
Sbjct: 266 WALKVYPSGDGEGQGNSLSLYVVAVDVKPYDKIYLKAKLRIIN--QRDSKHMEKKVESWS 323
Query: 709 VQGKDWGFQKVYP 747
Q WGFQK P
Sbjct: 324 DQANSWGFQKFVP 336
>At3g17380.1 68416.m02221 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 309
Score = 36.3 bits (80), Expect = 0.022
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Frame = +1
Query: 529 KWCLRVNPKG-LDEESKDYLSLYLLLVSCNKS----EVRAKFKFSILNAKREETKAME-S 690
KW L + P G + +KD++S+YL L + EV A F+ +L+ ++ ++ +
Sbjct: 51 KWKLVLYPNGNKSKNTKDHVSVYLSLADSSSLSPGWEVYAVFRLYLLDQNKDNYLILQGN 110
Query: 691 QRAYRFVQGKDWGFQKVYP 747
+R + V+ ++WGF K P
Sbjct: 111 ERRFHSVK-REWGFDKFIP 128
>At3g46190.1 68416.m05000 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 291
Score = 31.5 bits (68), Expect = 0.63
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = +1
Query: 514 ASDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNKSEVRAKFKFSILNAKREETKAMESQ 693
+S W L+V P G + LSLYLL S K+ VRA + +LN + +
Sbjct: 184 SSGDRNWVLKVYPNGDGVGKDNSLSLYLLSESNEKNYVRATLR--VLNQIGSD-NVEKPV 240
Query: 694 RAYRFVQGKDWGFQKVYP 747
+ WG+Q+ P
Sbjct: 241 EGWPNAAENGWGYQEFIP 258
>At3g43700.1 68416.m04664 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 415
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/44 (34%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Frame = +1
Query: 529 KWCLRVNPKGLD-EESKDYLSLYLLLVSCNKSEVRAKFKFSILN 657
+W + V P G + E++ Y+S++++L S +EVRA F+ S+++
Sbjct: 68 QWTIFVYPDGKNPEDNSSYVSVFIVLAS-ECTEVRALFELSLVD 110
>At1g31390.1 68414.m03843 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 268
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = +1
Query: 529 KWCLRVNPKGLDEESKDYLSLYLLLVSC----NKSEVRAKFKFSILNAKREETKAMESQR 696
KW L PKG E + LSLYL + N + K++ +++N E+ E +
Sbjct: 35 KWHLVAYPKGNGESTNKCLSLYLNVADFQSLPNGWKRHIKYRLTVVNQMSEKLSEQEVIQ 94
Query: 697 AYRFVQGKDWGFQKVYP 747
+ + GFQ + P
Sbjct: 95 GWFYKNFHISGFQTMLP 111
>At3g58340.1 68416.m06503 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 325
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Frame = +1
Query: 529 KWCLRVNPKGLDEESKDYLSLYLLLVSCNK--SEVR--AKFKFSILNAKREETKAMESQR 696
KW L PKG DYLSLYL + S R KF+ I+N +E + +
Sbjct: 35 KWRLVAFPKGY---KADYLSLYLEVADFKSLPSGWRRYVKFRACIVNQLSQELSVQQETQ 91
Query: 697 AYRFVQGKDWGFQKV 741
+ WGF+ +
Sbjct: 92 RWFDQNAPGWGFENM 106
>At3g58270.1 68416.m06496 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 343
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Frame = +1
Query: 520 DKLKWCLRVNPKGLDEESKDYLSLYLLLVSC----NKSEVRAKFKFSILNAKREETKAME 687
D KW L PKG E LSLYL + + A F FS++N +E
Sbjct: 32 DGCKWRLLAFPKGNGVEK---LSLYLAVAGSEFLPDGWRRHAYFHFSVVNQLSDELSQAR 88
Query: 688 SQRAYRFVQGKDWGF 732
+ + DWGF
Sbjct: 89 ETKNWFDASTSDWGF 103
>At3g58260.1 68416.m06495 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 321
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Frame = +1
Query: 529 KWCLRVNPKGLDEESKDYLSLYLLLVSCNKS-----EVRAKFKFSILNAKREETKAMESQ 693
KW L P+ D + LS+YL + C +S + AKF +I+N E ++
Sbjct: 35 KWRLIAYPEVNDADGYLSLSVYLGVPDCCESLPSGWKRHAKFSLTIVNQLSEGLSQVQET 94
Query: 694 RAYRFVQGKDWGF 732
+A+ WGF
Sbjct: 95 QAWFDENAPGWGF 107
>At1g58270.1 68414.m06628 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 396
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +1
Query: 484 SVKIIDFLTG---ASDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCN-KSEVRAKFK 642
S + +D T +S W L+V P G+ + + LSLYLL N K V AK +
Sbjct: 262 STRFLDSYTSDSFSSGGRNWALKVYPNGVGNATGNSLSLYLLSDQSNDKGYVEAKLR 318
>At2g01790.1 68415.m00109 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 269
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +1
Query: 529 KWCLRVNPKGLDEESKDYLSLYLLLVSC----NKSEVRAKFKFSILN 657
KWCL P+G + DY SLYL + + RAK F+++N
Sbjct: 35 KWCLLALPEGNNNYIYDYFSLYLCVPDSEYLPSGWRRRAKVSFTMVN 81
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -2
Query: 345 TAIPPAPFEETRADCGEGAPPPDPP 271
TA PP P +TRA APPP PP
Sbjct: 774 TAPPPPPLGQTRA---PSAPPPPPP 795
>At4g17280.1 68417.m02597 auxin-responsive family protein similar to
auxin-induced protein AIR12 (GI:11357190) [Arabidopsis
thaliana]
Length = 297
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 414 TCVKHQFSATGVFPSCNGL 358
TC K++FS+ VF SCN L
Sbjct: 33 TCSKYKFSSNNVFDSCNDL 51
>At3g03740.1 68416.m00379 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 465
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/81 (24%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Frame = +1
Query: 529 KWCLRVNPKGLD-EESKDYLSLYLLLVSCNKSEVRAKFKFSILNAKREE--------TKA 681
+W + P G + E++ Y+S+++ L S + ++VRA F+ S+L+ + +A
Sbjct: 79 QWAIYFYPDGKNPEDNSAYVSVFIALAS-DGTDVRALFELSLLDQSGKGKHKVHSHFDRA 137
Query: 682 MESQRAYRFVQGKDWGFQKVY 744
+ES +G WG+++ +
Sbjct: 138 LESGPYTLKYRGSMWGYKRFF 158
>At4g00780.1 68417.m00108 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein contains Pfam
profile PF00917: MATH domain
Length = 299
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +1
Query: 529 KWCLRVNPKG-LDEESKD---YLSLYLLLVSCNKSEVRAKFKFSILN 657
KW L V+P+G +DE+ K YLS + + ++ AKFK +L+
Sbjct: 194 KWRLEVHPRGYMDEKDKSFSVYLSAEGFVNNAPMTKTYAKFKLRVLD 240
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 336 PPAPFEETRADCGEGAPPPDPPTHSFNQRSAR 241
PP P TR + APPP PP + + S R
Sbjct: 642 PPPPPPPTRIPAAKCAPPPPPPPPTSHSGSIR 673
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = -2
Query: 336 PPAPFEETRADCGEGAPPPDPPTHSFNQR 250
PP P + PPP PP SF+ R
Sbjct: 530 PPPPLFTSTTSFSPSQPPPPPPLPSFSNR 558
>At2g39760.1 68415.m04882 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 408
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/43 (27%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +1
Query: 532 WCLRVNPKGLD-EESKDYLSLYLLLVSCNKSEVRAKFKFSILN 657
W + P G + E+ Y+SL++ L S + +++RA F+ ++++
Sbjct: 58 WAIYFYPDGKNPEDQSSYISLFIALAS-DSNDIRALFELTLMD 99
>At3g22080.1 68416.m02786 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 595
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 529 KWCLRVNPKGLDEESKDYLSLYLLL 603
KW L++ PKG + + +LSLYL L
Sbjct: 487 KWVLKLYPKGDVKGDRKWLSLYLYL 511
>At1g45688.1 68414.m05202 expressed protein
Length = 342
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 354 TRLTAIPPAPFEETRADCGEGAPPPDPP 271
T L PPAP + + G P PDPP
Sbjct: 256 TLLPPAPPAPLPKPKKKKGAPVPIPDPP 283
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2
Query: 659 LKEKKLKQWNRNGRTDSCKEKTGDSKKFIQKR 754
LKEK+L++WNR + D K+ ++++ I KR
Sbjct: 302 LKEKELEEWNR--KVDLSMSKSKETEEDITKR 331
>At1g13220.1 68414.m01533 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 391
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2
Query: 659 LKEKKLKQWNRNGRTDSCKEKTGDSKKFIQKR 754
LKEK+L++WNR + D K+ ++++ I KR
Sbjct: 315 LKEKELEEWNR--KVDLSMSKSKETEEDITKR 344
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,968,728
Number of Sequences: 28952
Number of extensions: 285591
Number of successful extensions: 1049
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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