BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV021807 (704 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 116 4e-27 SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 116 4e-27 SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 26 4.6 SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 26 4.6 SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 26 4.6 SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 25 8.0 >SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizosaccharomyces pombe|chr 2|||Manual Length = 363 Score = 116 bits (278), Expect = 4e-27 Identities = 54/91 (59%), Positives = 56/91 (61%) Frame = +3 Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXX 434 QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH Sbjct: 61 QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEK 120 Query: 435 XXXXXXXXXXXXXXXXXQARGHIIERFPNFP 527 ARGH IE P P Sbjct: 121 RYAIASAVAASGVPSLLLARGHRIEEIPEVP 151 Score = 85.4 bits (202), Expect = 7e-18 Identities = 37/62 (59%), Positives = 50/62 (80%) Frame = +2 Query: 509 KIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRK 688 +IPE+PLVV D VQ KTK+AV L+ +KA+ D++KV S++LRAGKGK+RNRR +QR+ Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRR 205 Query: 689 GP 694 GP Sbjct: 206 GP 207 Score = 77.4 bits (182), Expect = 2e-15 Identities = 35/62 (56%), Positives = 46/62 (74%) Frame = +1 Query: 73 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 252 ++ ARP VS+Y+ K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG Sbjct: 1 MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59 Query: 253 HK 258 H+ Sbjct: 60 HQ 61 >SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizosaccharomyces pombe|chr 2|||Manual Length = 363 Score = 116 bits (278), Expect = 4e-27 Identities = 54/91 (59%), Positives = 56/91 (61%) Frame = +3 Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXX 434 QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH Sbjct: 61 QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEK 120 Query: 435 XXXXXXXXXXXXXXXXXQARGHIIERFPNFP 527 ARGH IE P P Sbjct: 121 RYAISSAVAASGVPSLLLARGHRIEEIPEVP 151 Score = 85.0 bits (201), Expect = 9e-18 Identities = 37/62 (59%), Positives = 50/62 (80%) Frame = +2 Query: 509 KIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRK 688 +IPE+PLVV D VQ KTK+AV L+ +KA+ D++KV S++LRAGKGK+RNRR +QR+ Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRR 205 Query: 689 GP 694 GP Sbjct: 206 GP 207 Score = 78.2 bits (184), Expect = 1e-15 Identities = 36/62 (58%), Positives = 46/62 (74%) Frame = +1 Query: 73 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 252 ++ ARP VS+YS K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG Sbjct: 1 MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59 Query: 253 HK 258 H+ Sbjct: 60 HQ 61 >SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizosaccharomyces pombe|chr 1|||Manual Length = 532 Score = 26.2 bits (55), Expect = 4.6 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = +3 Query: 72 SIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGP 182 SI SP+ SVG + D + S + P+ + G + P Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348 >SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr 2|||Manual Length = 606 Score = 26.2 bits (55), Expect = 4.6 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = -1 Query: 134 APCTVSLFSEYTDTKGRATDRLISLL 57 A C V ++SEYT G ++ L++L+ Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515 >SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pombe|chr 1|||Manual Length = 355 Score = 26.2 bits (55), Expect = 4.6 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = +3 Query: 147 PVRVQGAHTSGPGQ*CSRFYVQELEAALLREQ 242 PV VQG HT G +F Q L A +L Q Sbjct: 29 PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60 >SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schizosaccharomyces pombe|chr 1|||Manual Length = 624 Score = 25.4 bits (53), Expect = 8.0 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%) Frame = -1 Query: 695 KGPY--AGYDDGCAFYPYQHEDAETCTP*GYQTMP 597 KGP+ G D +PY+H D+ P G+ ++P Sbjct: 401 KGPHFQIGAIDNSLAFPYKHPDSWRSFPYGWLSLP 435 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,761,220 Number of Sequences: 5004 Number of extensions: 54193 Number of successful extensions: 170 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 156 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 168 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 327172622 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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