Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021806
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    58   9e-10
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    27   2.6  
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    26   4.5  

>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 58.4 bits (135), Expect = 9e-10
 Identities = 28/59 (47%), Positives = 38/59 (64%)
 Frame = +3

Query: 255 YVMLHQAQTGAPCLSFDIVTDNLGNDRNEFPMTAYLVAGTQASSAHLNNLLVIKMSNLH 431
           Y MLH  Q   P LSFDI+ D+LG +R  +P   YLV G+QA  ++ N L V+K+S L+
Sbjct: 94  YEMLHNIQVKWPFLSFDILQDSLGEERRAWPHQMYLVGGSQALDSNDNELTVMKLSQLY 152



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
 Frame = +2

Query: 524 IKHQGCVNRIRAT----NFKNSVLAASWSELGRVDIWNITPQLQAVGDPGVL 667
           I  +G  NR+R+     N     L AS+ E G+V IW+I P L+++  PGV+
Sbjct: 179 ISTKGACNRVRSARRPANSSKESLLASFHETGKVHIWDIAPHLRSLDSPGVM 230


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 184 HRSGHSPLLHSFHRLHSLNLSP 119
           HR  HSP+   FH+   LN+SP
Sbjct: 32  HRLSHSPMAEGFHK-PKLNISP 52


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 654 SPTACSCGVIFQMSTRPSSDQLA 586
           +PT C   VI    TRPSS +LA
Sbjct: 99  TPTTCQPKVIIGYDTRPSSPRLA 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,770
Number of Sequences: 5004
Number of extensions: 47166
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)