Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021806
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0207 - 1559491-1559544,1559806-1560161,1560244-1560363,156...    58   9e-09
11_01_0204 - 1612505-1612636,1612809-1612926,1613050-1613162,161...    57   1e-08
06_03_1175 + 28168007-28170058                                         29   4.7  
03_02_0435 - 8406262-8406419,8406499-8406547,8406577-8407458,840...    29   4.7  
09_04_0404 + 17322664-17322718,17323676-17323849,17324695-173248...    28   6.2  
02_02_0151 - 7220335-7220819,7220933-7223507                           28   6.2  

>12_01_0207 -
           1559491-1559544,1559806-1560161,1560244-1560363,
           1561523-1561568,1561741-1561858,1561981-1562093,
           1562586-1562658,1562743-1562882,1563005-1563075,
           1563228-1563396,1563594-1563659,1564052-1564150,
           1564271-1564444,1564720-1564798,1564901-1565007,
           1565391-1565435
          Length = 609

 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 29/59 (49%), Positives = 36/59 (61%)
 Frame = +3

Query: 255 YVMLHQAQTGAPCLSFDIVTDNLGNDRNEFPMTAYLVAGTQASSAHLNNLLVIKMSNLH 431
           Y  L     G PCLSFD+V D LG  R+EFP T Y VAGTQA  A  N + + K+ N++
Sbjct: 37  YNYLRGFNIGWPCLSFDVVRDQLGLVRSEFPHTLYGVAGTQAERASWNYIGIFKICNIN 95



 Score = 33.1 bits (72), Expect = 0.22
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 524 IKHQGCVNRIRATNFKNSVLAASWSELGRVDI 619
           + H GCVNRIR+ N +   + A+W + G V +
Sbjct: 139 VAHAGCVNRIRSMN-QEPHICATWGDTGHVQV 169


>11_01_0204 -
           1612505-1612636,1612809-1612926,1613050-1613162,
           1613640-1613712,1613797-1613936,1614059-1614129,
           1614262-1614430,1614625-1614690,1615081-1615179,
           1615298-1615471,1615745-1615823,1615929-1616035,
           1616395-1616439
          Length = 461

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 29/59 (49%), Positives = 36/59 (61%)
 Frame = +3

Query: 255 YVMLHQAQTGAPCLSFDIVTDNLGNDRNEFPMTAYLVAGTQASSAHLNNLLVIKMSNLH 431
           Y  L     G PCLSFD+V D LG  R+EFP T Y VAGTQA  A  N + + K+ N++
Sbjct: 37  YNYLRGFNIGWPCLSFDVVRDQLGLVRSEFPHTLYGVAGTQAERATWNYIGIFKICNIN 95



 Score = 33.1 bits (72), Expect = 0.22
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 524 IKHQGCVNRIRATNFKNSVLAASWSELGRVDI 619
           + H GCVNRIR+ N +   + A+W + G V +
Sbjct: 139 VAHAGCVNRIRSMN-QEPHICATWGDTGHVQV 169


>06_03_1175 + 28168007-28170058
          Length = 683

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 563 NFKNSVLAASWSELGRVDIWNIT 631
           N+   V   +WS +GR+D WN+T
Sbjct: 243 NYMVQVTIDNWSPIGRLDNWNLT 265


>03_02_0435 -
           8406262-8406419,8406499-8406547,8406577-8407458,
           8408976-8409127,8410346-8410616
          Length = 503

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 273 AQTGAPCLSFDIVTDNLGNDRNEFPMTAYLVAGTQASSAHLNNLLVIKM 419
           A+    CL     T+N  N  N  P + YL+     S A+L++  ++ M
Sbjct: 387 AEKAVACLRHSRRTENTVNPTNSNPESGYLLPSASVSLANLSDKKILSM 435


>09_04_0404 +
           17322664-17322718,17323676-17323849,17324695-17324876,
           17325312-17325417,17325708-17325784,17326485-17326572,
           17327320-17327509,17328353-17328479,17328584-17328664,
           17328815-17328916,17329042-17329137,17329279-17329353,
           17329746-17329865,17330319-17330447,17330762-17330839,
           17331330-17331416,17333538-17333651,17334294-17334362,
           17334741-17334785
          Length = 664

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 700 GLEXCPQVVPF*HTGVTHGLQLWC-DIPNVNSA 605
           G+   P  V + H+G + G + WC  IPN NSA
Sbjct: 608 GVASAPDAVEYLHSGKSVG-KAWCFQIPNTNSA 639


>02_02_0151 - 7220335-7220819,7220933-7223507
          Length = 1019

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 432 DVGLTFLLPKDYSNVHLTLVFRRPNKQS*EI 340
           D GLT  +P+D+SN+HL  +    N+ S E+
Sbjct: 547 DNGLTGDIPQDFSNLHLNFLNLSSNQLSGEV 577


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,351,580
Number of Sequences: 37544
Number of extensions: 290154
Number of successful extensions: 562
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)