Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021806
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35398| Best HMM Match : No HMM Matches (HMM E-Value=.)              82   5e-16
SB_57418| Best HMM Match : WD40 (HMM E-Value=4.5e-15)                  82   5e-16
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             28   6.4  

>SB_35398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 33/54 (61%), Positives = 45/54 (83%)
 Frame = +3

Query: 270 QAQTGAPCLSFDIVTDNLGNDRNEFPMTAYLVAGTQASSAHLNNLLVIKMSNLH 431
           +AQTGAPCLSFD++ DNLG  R E+PMTAY++AGTQ+  +  N+++V+KMS LH
Sbjct: 62  EAQTGAPCLSFDVIPDNLGEARTEYPMTAYILAGTQSERSRANHIIVMKMSELH 115


>SB_57418| Best HMM Match : WD40 (HMM E-Value=4.5e-15)
          Length = 365

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 33/54 (61%), Positives = 45/54 (83%)
 Frame = +3

Query: 270 QAQTGAPCLSFDIVTDNLGNDRNEFPMTAYLVAGTQASSAHLNNLLVIKMSNLH 431
           +AQTGAPCLSFD++ DNLG  R E+PMTAY++AGTQ+  +  N+++V+KMS LH
Sbjct: 62  EAQTGAPCLSFDVIPDNLGEARTEYPMTAYILAGTQSERSRANHIIVMKMSELH 115



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 22/46 (47%), Positives = 29/46 (63%)
 Frame = +2

Query: 524 IKHQGCVNRIRATNFKNSVLAASWSELGRVDIWNITPQLQAVGDPG 661
           +KH G VNRIR  +  N  + ASWSE G V IW++  Q+ A  +PG
Sbjct: 159 LKHNGGVNRIRHGHIPNRHIVASWSERGSVHIWDVEAQIIASDNPG 204


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 702  RDWKXVPKWYLSNTPGSPTACSC 634
            RDWK  P+   SNTPG   +  C
Sbjct: 1880 RDWKSCPRGTYSNTPGLSRSGQC 1902


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,321,272
Number of Sequences: 59808
Number of extensions: 345184
Number of successful extensions: 653
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)