Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021806
         (702 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF011614-1|ABK41104.1|  446|Homo sapiens CDW4/GRWD1 protein.           89   1e-17
BC002440-1|AAH02440.1|  446|Homo sapiens glutamate-rich WD repea...    89   1e-17
AF337808-1|AAK17998.1|  446|Homo sapiens glutamate rich WD repea...    89   1e-17
AB075822-1|BAB85528.1|  445|Homo sapiens KIAA1942 protein protein.     89   1e-17
AK074676-1|BAC11130.1|  446|Homo sapiens protein ( Homo sapiens ...    88   3e-17

>EF011614-1|ABK41104.1|  446|Homo sapiens CDW4/GRWD1 protein.
          Length = 446

 Score = 89.4 bits (212), Expect = 1e-17
 Identities = 39/64 (60%), Positives = 49/64 (76%)
 Frame = +3

Query: 255 YVMLHQAQTGAPCLSFDIVTDNLGNDRNEFPMTAYLVAGTQASSAHLNNLLVIKMSNLHP 434
           YV+ H+AQTGAPCLSFDIV D+LG++R E P+T YL AGTQA SA  N L++++M NLH 
Sbjct: 54  YVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLTLYLCAGTQAESAQSNRLMMLRMHNLHG 113

Query: 435 ISKP 446
              P
Sbjct: 114 TKPP 117



 Score = 38.3 bits (85), Expect = 0.026
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +2

Query: 509 MTFSFIKHQGCVNRIRATNFKNSVLAASWSELGRVDIWNITPQLQAVGDPGVLERY 676
           +  + + H G +NR+R +      +A  WSE G+V+++ +   LQ V +P  L  +
Sbjct: 141 LELAMVPHYGGINRVRVSWLGEEPVAGVWSEKGQVEVFALRRLLQVVEEPQALAAF 196


>BC002440-1|AAH02440.1|  446|Homo sapiens glutamate-rich WD repeat
           containing 1 protein.
          Length = 446

 Score = 89.4 bits (212), Expect = 1e-17
 Identities = 39/64 (60%), Positives = 49/64 (76%)
 Frame = +3

Query: 255 YVMLHQAQTGAPCLSFDIVTDNLGNDRNEFPMTAYLVAGTQASSAHLNNLLVIKMSNLHP 434
           YV+ H+AQTGAPCLSFDIV D+LG++R E P+T YL AGTQA SA  N L++++M NLH 
Sbjct: 54  YVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLTLYLCAGTQAESAQSNRLMMLRMHNLHG 113

Query: 435 ISKP 446
              P
Sbjct: 114 TKPP 117



 Score = 38.3 bits (85), Expect = 0.026
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +2

Query: 509 MTFSFIKHQGCVNRIRATNFKNSVLAASWSELGRVDIWNITPQLQAVGDPGVLERY 676
           +  + + H G +NR+R +      +A  WSE G+V+++ +   LQ V +P  L  +
Sbjct: 141 LELAMVPHYGGINRVRVSWLGEEPVAGVWSEKGQVEVFALRRLLQVVEEPQALAAF 196


>AF337808-1|AAK17998.1|  446|Homo sapiens glutamate rich WD repeat
           protein protein.
          Length = 446

 Score = 89.4 bits (212), Expect = 1e-17
 Identities = 39/64 (60%), Positives = 49/64 (76%)
 Frame = +3

Query: 255 YVMLHQAQTGAPCLSFDIVTDNLGNDRNEFPMTAYLVAGTQASSAHLNNLLVIKMSNLHP 434
           YV+ H+AQTGAPCLSFDIV D+LG++R E P+T YL AGTQA SA  N L++++M NLH 
Sbjct: 54  YVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLTLYLCAGTQAESAQSNRLMMLRMHNLHG 113

Query: 435 ISKP 446
              P
Sbjct: 114 TKPP 117



 Score = 38.3 bits (85), Expect = 0.026
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +2

Query: 509 MTFSFIKHQGCVNRIRATNFKNSVLAASWSELGRVDIWNITPQLQAVGDPGVLERY 676
           +  + + H G +NR+R +      +A  WSE G+V+++ +   LQ V +P  L  +
Sbjct: 141 LELAMVPHYGGINRVRVSWLGEEPVAGVWSEKGQVEVFALRRLLQVVEEPQALAAF 196


>AB075822-1|BAB85528.1|  445|Homo sapiens KIAA1942 protein protein.
          Length = 445

 Score = 89.4 bits (212), Expect = 1e-17
 Identities = 39/64 (60%), Positives = 49/64 (76%)
 Frame = +3

Query: 255 YVMLHQAQTGAPCLSFDIVTDNLGNDRNEFPMTAYLVAGTQASSAHLNNLLVIKMSNLHP 434
           YV+ H+AQTGAPCLSFDIV D+LG++R E P+T YL AGTQA SA  N L++++M NLH 
Sbjct: 53  YVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLTLYLCAGTQAESAQSNRLMMLRMHNLHG 112

Query: 435 ISKP 446
              P
Sbjct: 113 TKPP 116



 Score = 38.3 bits (85), Expect = 0.026
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +2

Query: 509 MTFSFIKHQGCVNRIRATNFKNSVLAASWSELGRVDIWNITPQLQAVGDPGVLERY 676
           +  + + H G +NR+R +      +A  WSE G+V+++ +   LQ V +P  L  +
Sbjct: 140 LELAMVPHYGGINRVRVSWLGEEPVAGVWSEKGQVEVFALRRLLQVVEEPQALAAF 195


>AK074676-1|BAC11130.1|  446|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90195 fis, clone MAMMA1001310. ).
          Length = 446

 Score = 87.8 bits (208), Expect = 3e-17
 Identities = 39/64 (60%), Positives = 48/64 (75%)
 Frame = +3

Query: 255 YVMLHQAQTGAPCLSFDIVTDNLGNDRNEFPMTAYLVAGTQASSAHLNNLLVIKMSNLHP 434
           YV+ H+AQTGAPCLSFDIV D+LG++R E P+T YL AGTQA SA  N L+++ M NLH 
Sbjct: 54  YVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLTLYLCAGTQAESAQSNRLMMLLMHNLHG 113

Query: 435 ISKP 446
              P
Sbjct: 114 TKPP 117



 Score = 38.3 bits (85), Expect = 0.026
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +2

Query: 509 MTFSFIKHQGCVNRIRATNFKNSVLAASWSELGRVDIWNITPQLQAVGDPGVLERY 676
           +  + + H G +NR+R +      +A  WSE G+V+++ +   LQ V +P  L  +
Sbjct: 141 LELAMVPHYGGINRVRVSWLGEEPVAGVWSEKGQVEVFALRRLLQVVEEPQALAAF 196


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,587,728
Number of Sequences: 237096
Number of extensions: 1649480
Number of successful extensions: 2551
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2551
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)