Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021806
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024818-3|AAF60780.2|  453|Caenorhabditis elegans Hypothetical ...    62   3e-10
AL032623-8|CAA21514.1|  123|Caenorhabditis elegans Hypothetical ...    32   0.35 
Z75547-4|CAA99900.1|  201|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z48334-5|CAA88312.1|  424|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p...    29   4.3  
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p...    29   4.3  

>AC024818-3|AAF60780.2|  453|Caenorhabditis elegans Hypothetical
           protein Y54H5A.1 protein.
          Length = 453

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 30/80 (37%), Positives = 44/80 (55%)
 Frame = +3

Query: 204 TRPAFKGR*TIGL*SFCYVMLHQAQTGAPCLSFDIVTDNLGNDRNEFPMTAYLVAGTQAS 383
           +RP  KG   +      Y + H   +  PCLSFD+V D LG +R +FP   Y+V+GTQA 
Sbjct: 48  SRPLKKGE-ELDFDPSAYKLFHSFNSDWPCLSFDVVKDGLGENRTQFPAECYIVSGTQAD 106

Query: 384 SAHLNNLLVIKMSNLHPISK 443
               N ++V+ + NL  + K
Sbjct: 107 KPRDNEIIVMGLKNLTTMRK 126



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 21/49 (42%), Positives = 28/49 (57%)
 Frame = +2

Query: 494 RAETTMTFSFIKHQGCVNRIRATNFKNSVLAASWSELGRVDIWNITPQL 640
           + E  M    I H G +NRIR+    +S + A WS+ GRV +WNIT  L
Sbjct: 152 KREPKMHAVSIPHYGGINRIRSDRLGDSTVCACWSDQGRVQVWNITDAL 200


>AL032623-8|CAA21514.1|  123|Caenorhabditis elegans Hypothetical
           protein Y43F8B.7 protein.
          Length = 123

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 678 WYLSNTPGSPT--ACSCGVIFQMSTRPSSDQL 589
           W LS TP SPT    SCG IF  +T    DQL
Sbjct: 49  WKLSGTPSSPTCKTHSCGFIFWTNTHLLGDQL 80


>Z75547-4|CAA99900.1|  201|Caenorhabditis elegans Hypothetical
           protein R11D1.3 protein.
          Length = 201

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 332 IISKIVCNYVKAKTWGSSLSLMQHHIAE*SQTNCSSSFK 216
           I  K+V  +V AK WG +L L+   +   S+ NCS   K
Sbjct: 163 ICKKVVNQHVSAKWWGCALKLLP-SVMNTSKWNCSKIVK 200


>Z48334-5|CAA88312.1|  424|Caenorhabditis elegans Hypothetical
           protein F10B5.5 protein.
          Length = 424

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 288 PCLSFDIVTDNLGNDRN-EFPMTAYLVAGTQASSAHLNNLLV 410
           PC+ FD + +NL  D N +  + +Y+ A  + S  H+N  ++
Sbjct: 128 PCVEFDSIWENLIYDSNLKNEVMSYVAALARLSEKHVNTKII 169


>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
            protein F52C9.1a protein.
          Length = 1336

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = +2

Query: 518  SFIKHQGCVNRIRATNFKNSVLAASWSELGRVDIWNITPQLQAVG 652
            ++  HQ  + ++ A + +NS ++AS  +   V +W+I P+L  +G
Sbjct: 1103 NYTGHQEKIRKLAAISNENSFVSASSDKT--VKLWSIKPELDEIG 1145


>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
            protein F52C9.1b protein.
          Length = 1331

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = +2

Query: 518  SFIKHQGCVNRIRATNFKNSVLAASWSELGRVDIWNITPQLQAVG 652
            ++  HQ  + ++ A + +NS ++AS  +   V +W+I P+L  +G
Sbjct: 1103 NYTGHQEKIRKLAAISNENSFVSASSDKT--VKLWSIKPELDEIG 1145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,550,825
Number of Sequences: 27780
Number of extensions: 267594
Number of successful extensions: 467
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)