Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021806
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19540.1 68415.m02283 transducin family protein / WD-40 repea...    64   1e-10
At1g07390.1 68414.m00788 leucine-rich repeat family protein cont...    27   9.1  

>At2g19540.1 68415.m02283 transducin family protein / WD-40 repeat
           family protein contains WD-40 repeats (PF00400); similar
           to Glutamate-rich WD repeat protein (GRWD)
           (SP:Q9BQ67)[Homo sapiens]
          Length = 469

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 30/58 (51%), Positives = 39/58 (67%)
 Frame = +3

Query: 255 YVMLHQAQTGAPCLSFDIVTDNLGNDRNEFPMTAYLVAGTQASSAHLNNLLVIKMSNL 428
           Y  LH    G PCLSFDI+ D LG +R EFP T Y+VAGTQA  A  N++ + K++N+
Sbjct: 52  YNSLHGFHVGWPCLSFDILGDKLGLNRTEFPHTLYMVAGTQAEKAAHNSIGLFKITNV 109



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 18/44 (40%), Positives = 29/44 (65%)
 Frame = +2

Query: 524 IKHQGCVNRIRATNFKNSVLAASWSELGRVDIWNITPQLQAVGD 655
           + H GCVNRIRA   +NS +  SW++ G V +W+++  L A+ +
Sbjct: 156 VAHHGCVNRIRAMP-QNSHICVSWADSGHVQVWDMSSHLNALAE 198


>At1g07390.1 68414.m00788 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596
          Length = 976

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 196 FSGDHRSGHSPLLHSFHRLHSLNLS 122
           F    RS +  LLHSF +L SLNLS
Sbjct: 66  FESQTRSLNLSLLHSFPQLQSLNLS 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,536,618
Number of Sequences: 28952
Number of extensions: 242349
Number of successful extensions: 493
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)